Literature DB >> 20453936

Charge, hydrophobicity, and confined water: putting past simulations into a simple theoretical framework.

Jeremy L England1, Vijay S Pande.   

Abstract

Water permeates all life, and mediates forces that are essential to the process of macromolecular self-assembly. Predicting these forces in a given biological context is challenging, since water organizes itself differently next to charged and hydrophobic surfaces, both of which are typically at play on the nanoscale in vivo. In this work, we present a simple statistical mechanical model for the forces water mediates between different confining surfaces, and demonstrate that the model qualitatively unifies a wide range of phenomena known in the simulation literature, including several cases of protein folding under confinement.

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Year:  2010        PMID: 20453936      PMCID: PMC5328680          DOI: 10.1139/o09-187

Source DB:  PubMed          Journal:  Biochem Cell Biol        ISSN: 0829-8211            Impact factor:   3.626


  28 in total

Review 1.  Macromolecular electrostatics: continuum models and their growing pains.

Authors:  T Simonson
Journal:  Curr Opin Struct Biol       Date:  2001-04       Impact factor: 6.809

2.  Effects of electric charges on hydrophobic forces. II

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  2000-11

Review 3.  Molecular chaperones in the cytosol: from nascent chain to folded protein.

Authors:  F Ulrich Hartl; Manajit Hayer-Hartl
Journal:  Science       Date:  2002-03-08       Impact factor: 47.728

4.  Stabilization of proteins in confined spaces.

Authors:  H X Zhou; K A Dill
Journal:  Biochemistry       Date:  2001-09-25       Impact factor: 3.162

5.  An information theory model of hydrophobic interactions.

Authors:  G Hummer; S Garde; A E García; A Pohorille; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-20       Impact factor: 11.205

6.  Competition of hydrophobic and Coulombic interactions between nanosized solutes.

Authors:  J Dzubiella; J-P Hansen
Journal:  J Chem Phys       Date:  2004-09-15       Impact factor: 3.488

Review 7.  Interfaces and the driving force of hydrophobic assembly.

Authors:  David Chandler
Journal:  Nature       Date:  2005-09-29       Impact factor: 49.962

8.  Ribosome exit tunnel can entropically stabilize alpha-helices.

Authors:  Guy Ziv; Gilad Haran; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-15       Impact factor: 11.205

9.  Hydration force between model hydrophilic surfaces: computer simulations.

Authors:  L Lu; M L Berkowitz
Journal:  J Chem Phys       Date:  2006-03-14       Impact factor: 3.488

10.  Hydrogen bonds in liquid water are broken only fleetingly.

Authors:  J D Eaves; J J Loparo; C J Fecko; S T Roberts; A Tokmakoff; P L Geissler
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-31       Impact factor: 11.205

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  3 in total

1.  Derivation and assessment of phase-shifted, disordered vector field models for frustrated solvent interactions.

Authors:  Jeffrey K Weber; Vijay S Pande
Journal:  J Chem Phys       Date:  2013-02-28       Impact factor: 3.488

2.  Molecules, Information and the Origin of Life: What Is Next?

Authors:  Salvatore Chirumbolo; Antonio Vella
Journal:  Molecules       Date:  2021-02-14       Impact factor: 4.411

Review 3.  Control of Blood Coagulation by Hemocompatible Material Surfaces-A Review.

Authors:  Janna Kuchinka; Christian Willems; Dmitry V Telyshev; Thomas Groth
Journal:  Bioengineering (Basel)       Date:  2021-12-15
  3 in total

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