Literature DB >> 16679375

Mechanical deformation of spherical viruses with icosahedral symmetry.

Gerard Adriaan Vliegenthart1, Gerhard Gompper.   

Abstract

Virus capsids and crystalline surfactant vesicles are two examples of self-assembled shells in the nano- to micrometer size range. Virus capsids are particularly interesting since they have to sustain large internal pressures while encapsulating and protecting the viral DNA. We therefore study the mechanical properties of crystalline shells of icosahedral symmetry on a substrate under a uniaxial applied force by computer simulations. We predict the elastic response for small deformations, and the buckling transitions at large deformations. Both are found to depend strongly on the number of elementary building blocks N (the capsomers in the case of viral shells), the Föppl-von Kármán number gamma (which characterizes the relative importance of shear and bending elasticity), and the confining geometry. In particular, we show that whereas large shells are well described by continuum elasticity-theory, small shells of the size of typical viral capsids behave differently already for small deformations. Our results are essential to extract quantitative information about the elastic properties of viruses and vesicles from deformation experiments.

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Year:  2006        PMID: 16679375      PMCID: PMC1563762          DOI: 10.1529/biophysj.106.081422

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  26 in total

1.  Virus shapes and buckling transitions in spherical shells.

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2.  Viral self-assembly as a thermodynamic process.

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Authors:  Alex Evilevitch; Laurence Lavelle; Charles M Knobler; Eric Raspaud; William M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-24       Impact factor: 11.205

4.  Bacteriophage capsids: tough nanoshells with complex elastic properties.

Authors:  I L Ivanovska; P J de Pablo; B Ibarra; G Sgalari; F C MacKintosh; J L Carrascosa; C F Schmidt; G J L Wuite
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-07       Impact factor: 11.205

5.  Self-assembly of polyhedral shells: a molecular dynamics study.

Authors:  D C Rapaport
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-11-15

6.  Scaling of the buckling transition of ridges in thin sheets.

Authors:  B A DiDonna
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-07-09

7.  Asymptotic shape of elastic networks.

Authors: 
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8.  Defects in flexible membranes with crystalline order.

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9.  Weak protein-protein interactions are sufficient to drive assembly of hepatitis B virus capsids.

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Journal:  Biochemistry       Date:  2002-10-01       Impact factor: 3.162

10.  Self-assembly in aqueous solution of wheel-shaped Mo154 oxide clusters into vesicles.

Authors:  Tianbo Liu; Ekkehard Diemann; Huilin Li; Andreas W M Dress; Achim Müller
Journal:  Nature       Date:  2003-11-06       Impact factor: 49.962

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  16 in total

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Authors:  W H Roos; M M Gibbons; A Arkhipov; C Uetrecht; N R Watts; P T Wingfield; A C Steven; A J R Heck; K Schulten; W S Klug; G J L Wuite
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

2.  Mechanical limits of viral capsids.

Authors:  Mathias Buenemann; Peter Lenz
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-01       Impact factor: 11.205

3.  Influence of nonuniform geometry on nanoindentation of viral capsids.

Authors:  Melissa M Gibbons; William S Klug
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

4.  Modeling and simulation of the mechanical response from nanoindentation test of DNA-filled viral capsids.

Authors:  Aylin Ahadi; Dan Johansson; Alex Evilevitch
Journal:  J Biol Phys       Date:  2013-03-02       Impact factor: 1.365

5.  Structural transitions and energy landscape for Cowpea Chlorotic Mottle Virus capsid mechanics from nanomanipulation in vitro and in silico.

Authors:  Olga Kononova; Joost Snijder; Melanie Brasch; Jeroen Cornelissen; Ruxandra I Dima; Kenneth A Marx; Gijs J L Wuite; Wouter H Roos; Valeri Barsegov
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

6.  Built-in mechanical stress in viral shells.

Authors:  C Carrasco; A Luque; M Hernando-Pérez; R Miranda; J L Carrascosa; P A Serena; M de Ridder; A Raman; J Gómez-Herrero; I A T Schaap; D Reguera; P J de Pablo
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

7.  Primary changes of the mechanical properties of Southern Bean Mosaic Virus upon calcium removal.

Authors:  Mareike Zink; Helmut Grubmüller
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

8.  Fluctuating shells under pressure.

Authors:  Jayson Paulose; Gerard A Vliegenthart; Gerhard Gompper; David R Nelson
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-12       Impact factor: 11.205

9.  Swelling and softening of the cowpea chlorotic mottle virus in response to pH shifts.

Authors:  Bodo D Wilts; Iwan A T Schaap; Christoph F Schmidt
Journal:  Biophys J       Date:  2015-05-19       Impact factor: 4.033

10.  Mechanical properties of the icosahedral shell of southern bean mosaic virus: a molecular dynamics study.

Authors:  Mareike Zink; Helmut Grubmüller
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

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