Literature DB >> 17545309

Mechanical limits of viral capsids.

Mathias Buenemann1, Peter Lenz.   

Abstract

We studied the elastic properties and mechanical stability of viral capsids under external force-loading with computer simulations. Our approach allows the implementation of specific geometries corresponding to specific phages, such as phi29 and cowpea chlorotic mottle virus. We demonstrate how, in a combined numerical and experimental approach, the elastic parameters can be determined with high precision. The experimentally observed bimodality of elastic spring constants is shown to be of geometrical origin, namely the presence of pentavalent units in the viral shell. We define a criterion for capsid breakage that explains well the experimentally observed rupture. From our numerics we find a crossover from gamma(2/3) to gamma(1/2) for the dependence of the rupture force on the Föppl-von Kármán number, gamma. For filled capsids, high internal pressures lead to a stronger destabilization for viruses with buckled ground states versus viruses with unbuckled ground states. Finally, we show how our numerically calculated energy maps can be used to extract information about the strength of protein-protein interactions from rupture experiments.

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Year:  2007        PMID: 17545309      PMCID: PMC1891220          DOI: 10.1073/pnas.0611472104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  DNA packaging and ejection forces in bacteriophage.

Authors:  J Kindt; S Tzlil; A Ben-Shaul; W M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

2.  The refined structure of a protein catenane: the HK97 bacteriophage capsid at 3.44 A resolution.

Authors:  Charlotte Helgstrand; William R Wikoff; Robert L Duda; Roger W Hendrix; John E Johnson; Lars Liljas
Journal:  J Mol Biol       Date:  2003-12-12       Impact factor: 5.469

3.  Virus shapes and buckling transitions in spherical shells.

Authors:  Jack Lidmar; Leonid Mirny; David R Nelson
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-11-25

4.  Osmotic pressure inhibition of DNA ejection from phage.

Authors:  Alex Evilevitch; Laurence Lavelle; Charles M Knobler; Eric Raspaud; William M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-24       Impact factor: 11.205

5.  Bacteriophage capsids: tough nanoshells with complex elastic properties.

Authors:  I L Ivanovska; P J de Pablo; B Ibarra; G Sgalari; F C MacKintosh; J L Carrascosa; C F Schmidt; G J L Wuite
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-07       Impact factor: 11.205

6.  Molecular architecture of the prolate head of bacteriophage T4.

Authors:  Andrei Fokine; Paul R Chipman; Petr G Leiman; Vadim V Mesyanzhinov; Venigalla B Rao; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-07       Impact factor: 11.205

7.  The structure of isometric capsids of bacteriophage T4.

Authors:  N H Olson; M Gingery; F A Eiserling; T S Baker
Journal:  Virology       Date:  2001-01-20       Impact factor: 3.616

8.  Forces during bacteriophage DNA packaging and ejection.

Authors:  Prashant K Purohit; Mandar M Inamdar; Paul D Grayson; Todd M Squires; Jané Kondev; Rob Phillips
Journal:  Biophys J       Date:  2004-11-19       Impact factor: 4.033

9.  Defects in flexible membranes with crystalline order.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1988-07-15

10.  The structure of alfalfa mosaic virus capsid protein assembled as a T=1 icosahedral particle at 4.0-A resolution.

Authors:  A Kumar; V S Reddy; V Yusibov; P R Chipman; Y Hata; I Fita; K Fukuyama; M G Rossmann; L S Loesch-Fries; T S Baker; J E Johnson
Journal:  J Virol       Date:  1997-10       Impact factor: 5.103

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  10 in total

1.  Squeezing protein shells: how continuum elastic models, molecular dynamics simulations, and experiments coalesce at the nanoscale.

Authors:  W H Roos; M M Gibbons; A Arkhipov; C Uetrecht; N R Watts; P T Wingfield; A C Steven; A J R Heck; K Schulten; W S Klug; G J L Wuite
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

Review 2.  Sampling protein form and function with the atomic force microscope.

Authors:  Marian Baclayon; Wouter H Roos; Gijs J L Wuite
Journal:  Mol Cell Proteomics       Date:  2010-06-18       Impact factor: 5.911

3.  Probing the Link among Genomic Cargo, Contact Mechanics, and Nanoindentation in Recombinant Adeno-Associated Virus 2.

Authors:  Cheng Zeng; Sven Moller-Tank; Aravind Asokan; Bogdan Dragnea
Journal:  J Phys Chem B       Date:  2017-02-14       Impact factor: 2.991

4.  Structural transitions and energy landscape for Cowpea Chlorotic Mottle Virus capsid mechanics from nanomanipulation in vitro and in silico.

Authors:  Olga Kononova; Joost Snijder; Melanie Brasch; Jeroen Cornelissen; Ruxandra I Dima; Kenneth A Marx; Gijs J L Wuite; Wouter H Roos; Valeri Barsegov
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

5.  Fluctuating shells under pressure.

Authors:  Jayson Paulose; Gerard A Vliegenthart; Gerhard Gompper; David R Nelson
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-12       Impact factor: 11.205

6.  Molecular mechanism of capsid disassembly in hepatitis B virus.

Authors:  Zhaleh Ghaemi; Martin Gruebele; Emad Tajkhorshid
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-07       Impact factor: 11.205

7.  TensorCalculator: exploring the evolution of mechanical stress in the CCMV capsid.

Authors:  Olga Kononova; Farkhad Maksudov; Kenneth A Marx; Valeri Barsegov
Journal:  J Phys Condens Matter       Date:  2018-01-31       Impact factor: 2.333

8.  Nanoindentation of 35 virus capsids in a molecular model: relating mechanical properties to structure.

Authors:  Marek Cieplak; Mark O Robbins
Journal:  PLoS One       Date:  2013-06-13       Impact factor: 3.240

9.  Surface stresses in complex viral capsids and non-quasi-equivalent viral architectures.

Authors:  Giuliana Indelicato; Paolo Cermelli; Reidun Twarock
Journal:  J R Soc Interface       Date:  2020-08-05       Impact factor: 4.118

10.  Viral nanomechanics with a virtual atomic force microscope.

Authors:  María Aznar; Sergi Roca-Bonet; David Reguera
Journal:  J Phys Condens Matter       Date:  2018-05-17       Impact factor: 2.333

  10 in total

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