Literature DB >> 16592439

Use of solvent cavity area and number of packed solvent molecules around a solute in regard to hydrocarbon solubilities and hydrophobic interactions.

R B Hermann1.   

Abstract

Two currently used methods of calculating the area of contact between a solute molecule and the solvent are examined and some important differences are pointed out. Some pitfalls and uncertainties in the application of the concept of molecular surface area to the quantitative estimation of unitary free energies of solution are discussed.

Entities:  

Year:  1977        PMID: 16592439      PMCID: PMC431892          DOI: 10.1073/pnas.74.10.4144

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  8 in total

1.  Selective, conservative operations for cancer of the breast.

Authors:  R E Hermann
Journal:  Cleve Clin Q       Date:  1975

2.  Principles of protein-protein recognition.

Authors:  C Chothia; J Janin
Journal:  Nature       Date:  1975-08-28       Impact factor: 49.962

3.  Structural invariants in protein folding.

Authors:  C Chothia
Journal:  Nature       Date:  1975-03-27       Impact factor: 49.962

4.  Solubility of nonelectrolytes in polar solvents II: solubility of aliphatic alcohols in water.

Authors:  G L Amidon; S H Yalkowsky; S Leung
Journal:  J Pharm Sci       Date:  1974-12       Impact factor: 3.534

5.  Hydrophobic bonding and accessible surface area in proteins.

Authors:  C Chothia
Journal:  Nature       Date:  1974-03-22       Impact factor: 49.962

6.  Environment and exposure to solvent of protein atoms. Lysozyme and insulin.

Authors:  A Shrake; J A Rupley
Journal:  J Mol Biol       Date:  1973-09-15       Impact factor: 5.469

7.  The interpretation of protein structures: estimation of static accessibility.

Authors:  B Lee; F M Richards
Journal:  J Mol Biol       Date:  1971-02-14       Impact factor: 5.469

8.  Empirical correlation between hydrophobic free energy and aqueous cavity surface area.

Authors:  J A Reynolds; D B Gilbert; C Tanford
Journal:  Proc Natl Acad Sci U S A       Date:  1974-08       Impact factor: 11.205

  8 in total
  11 in total

1.  An information theory model of hydrophobic interactions.

Authors:  G Hummer; S Garde; A E García; A Pohorille; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-20       Impact factor: 11.205

2.  Quantification of the hydrophobic interaction by simulations of the aggregation of small hydrophobic solutes in water.

Authors:  T M Raschke; J Tsai; M Levitt
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-15       Impact factor: 11.205

3.  Localization and quantification of hydrophobicity: the molecular free energy density (MolFESD) concept and its application to sweetness recognition.

Authors:  R Jäger; F Schmidt; B Schilling; J Brickmann
Journal:  J Comput Aided Mol Des       Date:  2000-10       Impact factor: 3.686

4.  Interfacial free energy and the hydrophobic effect.

Authors:  C Tanford
Journal:  Proc Natl Acad Sci U S A       Date:  1979-09       Impact factor: 11.205

5.  Hydrophobic regions on protein surfaces. Derivation of the solvation energy from their area distribution in crystallographic protein structures.

Authors:  F Eisenhaber
Journal:  Protein Sci       Date:  1996-08       Impact factor: 6.725

6.  How Hofmeister ion interactions affect protein stability.

Authors:  R L Baldwin
Journal:  Biophys J       Date:  1996-10       Impact factor: 4.033

7.  Designing inhibitors of cytochrome c/cardiolipin peroxidase complexes: mitochondria-targeted imidazole-substituted fatty acids.

Authors:  Jianfei Jiang; Ahmet Bakan; Alexandr A Kapralov; K Ishara Silva; Zhentai Huang; Andrew A Amoscato; James Peterson; Venkata Krishna Garapati; Sunil Saxena; Hülya Bayir; Jeffrey Atkinson; Ivet Bahar; Valerian E Kagan
Journal:  Free Radic Biol Med       Date:  2014-03-12       Impact factor: 7.376

8.  Calculation of volume fluctuation for globular protein models.

Authors:  B Lee
Journal:  Proc Natl Acad Sci U S A       Date:  1983-01       Impact factor: 11.205

9.  A computational simulation study of benzamidine derivatives binding to arginine-specific gingipain (HRgpA) from periodontopathogen Porphyromonas gingivalis.

Authors:  Dooil Kim; Dae-Sil Lee
Journal:  Int J Mol Sci       Date:  2010-09-13       Impact factor: 5.923

Review 10.  Reconciling the understanding of 'hydrophobicity' with physics-based models of proteins.

Authors:  Robert C Harris; B Montgomery Pettitt
Journal:  J Phys Condens Matter       Date:  2016-02-02       Impact factor: 2.333

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