Literature DB >> 11008885

Localization and quantification of hydrophobicity: the molecular free energy density (MolFESD) concept and its application to sweetness recognition.

R Jäger1, F Schmidt, B Schilling, J Brickmann.   

Abstract

A method for the localization, the quantification, and the analysis of hydrophobicity of a molecule or a molecular fragment is presented. It is shown that the free energy of solvation for a molecule or the transfer free energy from one solvent to another can be represented by a surface integral of a scalar quantity, the molecular free energy surface density (MolFESD), over the solvent accessible surface of that molecule. This MolFESD concept is based on a model approach where the solvent molecules are considered to be small in comparison to the solute molecule, and the solvent can be represented by a continuous medium with a given dielectric constant. The transfer energy surface density for a 1-octanol/water system is empirically determined employing a set of atomic increment contributions and distance dependent membership functions measuring the contribution of the increments to the surface value of the MolFESD. The MolFESD concept can be well used for the quantification of the purely hydrophobic contribution to the binding constants of molecule-receptor complexes. This is demonstrated with the sweeteners sucrose and sucralose and various halogen derivatives. Therein the relative sweetness, which is assumed to be proportional to the binding constant, nicely correlates to the surface integral over the positive, hydrophobic part of the MolFESD, indicating that the sweetness receptor can be characterized by a highly flexible hydrophobic pocket instead of a localized binding site.

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Year:  2000        PMID: 11008885     DOI: 10.1023/a:1008181611372

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  33 in total

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Authors:  M Schaefer; C Froemmel
Journal:  J Mol Biol       Date:  1990-12-20       Impact factor: 5.469

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Journal:  Proc Natl Acad Sci U S A       Date:  1977-10       Impact factor: 11.205

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Authors:  A Radzicka; L Pedersen; R Wolfenden
Journal:  Biochemistry       Date:  1988-06-14       Impact factor: 3.162

Review 4.  Linear relationships between lipophilic character and biological activity of drugs.

Authors:  C Hansch; W J Dunn
Journal:  J Pharm Sci       Date:  1972-01       Impact factor: 3.534

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Authors:  L B Kier
Journal:  J Pharm Sci       Date:  1972-09       Impact factor: 3.534

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Authors:  C K Lee
Journal:  Adv Carbohydr Chem Biochem       Date:  1987       Impact factor: 12.200

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Authors:  M L Connolly
Journal:  Science       Date:  1983-08-19       Impact factor: 47.728

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Authors:  K A Sharp; A Nicholls; R F Fine; B Honig
Journal:  Science       Date:  1991-04-05       Impact factor: 47.728

9.  Differentiation of lipid-associating helices by use of three-dimensional molecular hydrophobicity potential calculations.

Authors:  R Brasseur
Journal:  J Biol Chem       Date:  1991-08-25       Impact factor: 5.157

10.  Binding of arylpiperazines, (aryloxy)propanolamines, and tetrahydropyridylindoles to the 5-HT1A receptor: contribution of the molecular lipophilicity potential to three-dimensional quantitative structure-affinity relationship models.

Authors:  P Gaillard; P A Carrupt; B Testa; P Schambel
Journal:  J Med Chem       Date:  1996-01-05       Impact factor: 7.446

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  1 in total

1.  Parameterization of an empirical model for the prediction of n-octanol, alkane and cyclohexane/water as well as brain/blood partition coefficients.

Authors:  Mohamed Zerara; Jürgen Brickmann; Robert Kretschmer; Thomas E Exner
Journal:  J Comput Aided Mol Des       Date:  2008-09-26       Impact factor: 3.686

  1 in total

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