Literature DB >> 16513787

Influence of the crystalline state on photoinduced dynamics of photoactive yellow protein studied by ultraviolet-visible transient absorption spectroscopy.

Sergey Yeremenko1, Ivo H M van Stokkum, Keith Moffat, Klaas J Hellingwerf.   

Abstract

Time-resolved ultraviolet-visible spectroscopy was used to characterize the photocycle transitions in single crystals of wild-type and the E-46Q mutant of photoactive yellow protein (PYP) with microsecond time resolution. The results were compared with the results of similar measurements on aqueous solutions of these two variants of PYP, with and without the components present in the mother liquor of crystals. The experimental data were analyzed with global and target analysis. Distinct differences in the reaction path of a PYP molecule are observed between these conditions when it progresses through its photocycle. In the crystalline state i), much faster relaxation of the late blue-shifted photocycle intermediate back to the ground state is observed; ii), this intermediate in crystalline PYP absorbs at 380 nm, rather than at 350-360 nm in solution; and iii), for various intermediates of this photocycle the forward reaction through the photocycle directly competes with a branching reaction that leads directly to the ground state. Significantly, with these altered characteristics, the spectroscopic data on PYP are fully consistent with the structural data obtained for this photoreceptor protein with time-resolved x-ray diffraction analysis, particularly for wild-type PYP.

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Year:  2006        PMID: 16513787      PMCID: PMC1459521          DOI: 10.1529/biophysj.105.074765

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  47 in total

1.  Kinetics of and intermediates in a photocycle branching reaction of the photoactive yellow protein from Ectothiorhodospira halophila.

Authors:  J Hendriks; I H van Stokkum; W Crielaard; K J Hellingwerf
Journal:  FEBS Lett       Date:  1999-09-17       Impact factor: 4.124

2.  NMR experiments for the study of photointermediates: application to the photoactive yellow protein.

Authors:  G Rubinstenn; G W Vuister; N Zwanenburg; K J Hellingwerf; R Boelens; R Kaptein
Journal:  J Magn Reson       Date:  1999-04       Impact factor: 2.229

Review 3.  Time-resolved biochemical crystallography: a mechanistic perspective.

Authors:  K Moffat
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

4.  Low-temperature Fourier transform infrared spectroscopy of photoactive yellow protein.

Authors:  Y Imamoto; Y Shirahige; F Tokunaga; T Kinoshita; K Yoshihara; M Kataoka
Journal:  Biochemistry       Date:  2001-07-31       Impact factor: 3.162

Review 5.  Global and target analysis of time-resolved spectra.

Authors:  Ivo H M van Stokkum; Delmar S Larsen; Rienk van Grondelle
Journal:  Biochim Biophys Acta       Date:  2004-07-09

6.  Controlled reduction of the humidity induces a shortcut recovery reaction in the photocycle of photoactive yellow protein.

Authors:  Michael A van der Horst; Ivo H M van Stokkum; Norbert A Dencher; Klaas J Hellingwerf
Journal:  Biochemistry       Date:  2005-06-28       Impact factor: 3.162

7.  The xanthopsins: a new family of eubacterial blue-light photoreceptors.

Authors:  R Kort; W D Hoff; M Van West; A R Kroon; S M Hoffer; K H Vlieg; W Crielaand; J J Van Beeumen; K J Hellingwerf
Journal:  EMBO J       Date:  1996-07-01       Impact factor: 11.598

8.  Short hydrogen bonds in photoactive yellow protein.

Authors:  Spencer Anderson; Sean Crosson; Keith Moffat
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-05-21

9.  Hydrogen-bond network probed by time-resolved optoacoustic spectroscopy: photoactive yellow protein and the effect of E46Q and E46A mutations.

Authors:  Aba Losi; Thomas Gensch; Michael A van der Horst; Klaas J Hellingwerf; Silvia E Braslavsky
Journal:  Phys Chem Chem Phys       Date:  2005-05-21       Impact factor: 3.676

10.  Photoactive yellow protein from the purple phototrophic bacterium, Ectothiorhodospira halophila. Quantum yield of photobleaching and effects of temperature, alcohols, glycerol, and sucrose on kinetics of photobleaching and recovery.

Authors:  T E Meyer; G Tollin; J H Hazzard; M A Cusanovich
Journal:  Biophys J       Date:  1989-09       Impact factor: 4.033

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  20 in total

1.  pH dependence of the photoactive yellow protein photocycle investigated by time-resolved crystallography.

Authors:  Shailesh Tripathi; Vukica Srajer; Namrta Purwar; Robert Henning; Marius Schmidt
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

Review 2.  Synergy within structural biology of single crystal optical spectroscopy and X-ray crystallography.

Authors:  Teresa De la Mora-Rey; Carrie M Wilmot
Journal:  Curr Opin Struct Biol       Date:  2007-10-23       Impact factor: 6.809

Review 3.  Coherent multidimensional optical spectroscopy of excitons in molecular aggregates; quasiparticle versus supermolecule perspectives.

Authors:  Darius Abramavicius; Benoit Palmieri; Dmitri V Voronine; Frantisek Sanda; Shaul Mukamel
Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

Review 4.  X-ray scattering combined with coordinate-based analyses for applications in natural and artificial photosynthesis.

Authors:  David M Tiede; Kristy L Mardis; Xiaobing Zuo
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

5.  On the involvement of single-bond rotation in the primary photochemistry of photoactive yellow protein.

Authors:  Andreas D Stahl; Marijke Hospes; Kushagra Singhal; Ivo van Stokkum; Rienk van Grondelle; Marie Louise Groot; Klaas J Hellingwerf
Journal:  Biophys J       Date:  2011-09-07       Impact factor: 4.033

6.  Ultrafast infrared spectroscopy reveals a key step for successful entry into the photocycle for photoactive yellow protein.

Authors:  L J G W van Wilderen; M A van der Horst; I H M van Stokkum; K J Hellingwerf; R van Grondelle; M L Groot
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-02       Impact factor: 11.205

Review 7.  Time-resolved crystallography and protein design: signalling photoreceptors and optogenetics.

Authors:  Keith Moffat
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

Review 8.  Time-resolved structural studies at synchrotrons and X-ray free electron lasers: opportunities and challenges.

Authors:  Richard Neutze; Keith Moffat
Journal:  Curr Opin Struct Biol       Date:  2012-09-25       Impact factor: 6.809

9.  Protein structural dynamics revealed by time-resolved X-ray solution scattering.

Authors:  Jong Goo Kim; Tae Wu Kim; Jeongho Kim; Hyotcherl Ihee
Journal:  Acc Chem Res       Date:  2015-07-02       Impact factor: 22.384

10.  Combined probes of X-ray scattering and optical spectroscopy reveal how global conformational change is temporally and spatially linked to local structural perturbation in photoactive yellow protein.

Authors:  Tae Wu Kim; Cheolhee Yang; Youngmin Kim; Jong Goo Kim; Jeongho Kim; Yang Ouk Jung; Sunhong Jun; Sang Jin Lee; Sungjun Park; Irina Kosheleva; Robert Henning; Jasper J van Thor; Hyotcherl Ihee
Journal:  Phys Chem Chem Phys       Date:  2016-04-07       Impact factor: 3.676

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