Literature DB >> 16513779

Modeling the statistics of elementary calcium release events.

Ghanim Ullah1, Peter Jung.   

Abstract

Elementary Ca(2+) signals, such as "Ca(2+) puffs", which arise from the release of Ca(2+) from endoplasmic reticulum through small clusters of inositol 1,4,5-trisphosphate receptors, are the building blocks for intracellular Ca(2+) signaling. The small number of release channels involved during a Ca(2+) puff renders the puffs stochastic, with distributed amplitudes, durations, and frequency, well characterized experimentally. We present a stochastic model that accurately describes simultaneously the statistical properties of the duration, amplitudes, frequencies, and spatial spread with a single set of parameters.

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Year:  2006        PMID: 16513779      PMCID: PMC1440731          DOI: 10.1529/biophysj.105.073460

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  29 in total

1.  From calcium blips to calcium puffs: theoretical analysis of the requirements for interchannel communication.

Authors:  S Swillens; G Dupont; L Combettes; P Champeil
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Stochastic spreading of intracellular Ca(2+) release.

Authors:  M Falcke; L Tsimring; H Levine
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  2000-08

3.  Sparks and puffs in oligodendrocyte progenitors: cross talk between ryanodine receptors and inositol trisphosphate receptors.

Authors:  L L Haak; L S Song; T F Molinski; I N Pessah; H Cheng; J T Russell
Journal:  J Neurosci       Date:  2001-06-01       Impact factor: 6.167

4.  Stochastic properties of Ca(2+) release of inositol 1,4,5-trisphosphate receptor clusters.

Authors:  Jian-Wei Shuai; Peter Jung
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

5.  Hormone-evoked elementary Ca2+ signals are not stereotypic, but reflect activation of different size channel clusters and variable recruitment of channels within a cluster.

Authors:  D Thomas; P Lipp; M J Berridge; M D Bootman
Journal:  J Biol Chem       Date:  1998-10-16       Impact factor: 5.157

6.  A dynamic model of the type-2 inositol trisphosphate receptor.

Authors:  James Sneyd; Jean-Francois Dufour
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

7.  Initiation of IP(3)-mediated Ca(2+) waves in Xenopus oocytes.

Authors:  J Marchant; N Callamaras; I Parker
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

8.  Inositol-trisphosphate-dependent intercellular calcium signaling in and between astrocytes and endothelial cells.

Authors:  L Leybaert; K Paemeleire; A Strahonja; M J Sanderson
Journal:  Glia       Date:  1998-12       Impact factor: 7.452

9.  Buffers and oscillations in intracellular Ca2+ dynamics.

Authors:  Martin Falcke
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

10.  Calcium puffs are generic InsP(3)-activated elementary calcium signals and are downregulated by prolonged hormonal stimulation to inhibit cellular calcium responses.

Authors:  S C Tovey; P de Smet; P Lipp; D Thomas; K W Young; L Missiaen; H De Smedt; J B Parys; M J Berridge; J Thuring; A Holmes; M D Bootman
Journal:  J Cell Sci       Date:  2001-11       Impact factor: 5.285

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  13 in total

1.  The number and spatial distribution of IP3 receptors underlying calcium puffs in Xenopus oocytes.

Authors:  Jianwei Shuai; Heather J Rose; Ian Parker
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

2.  TraceSpecks: A Software for Automated Idealization of Noisy Patch-Clamp and Imaging Data.

Authors:  Syed Islamuddin Shah; Angelo Demuro; Don-On Daniel Mak; Ian Parker; John E Pearson; Ghanim Ullah
Journal:  Biophys J       Date:  2018-07-03       Impact factor: 4.033

3.  Simulation of spontaneous Ca2+ oscillations in astrocytes mediated by voltage-gated calcium channels.

Authors:  Shuai Zeng; Bing Li; Shaoqun Zeng; Shangbin Chen
Journal:  Biophys J       Date:  2009-11-04       Impact factor: 4.033

4.  Mode switching of Inositol 1,4,5-trisphosphate receptor channel shapes the Spatiotemporal scales of Ca2+ signals.

Authors:  Ghanim Ullah; Aman Ullah
Journal:  J Biol Phys       Date:  2016-05-06       Impact factor: 1.365

5.  Quantifying the uncertainty of spontaneous Ca2+ oscillations in astrocytes: particulars of Alzheimer's disease.

Authors:  J Riera; R Hatanaka; T Uchida; T Ozaki; R Kawashima
Journal:  Biophys J       Date:  2011-08-03       Impact factor: 4.033

6.  Multi-scale data-driven modeling and observation of calcium puffs.

Authors:  Ghanim Ullah; Ian Parker; Don-On Daniel Mak; John E Pearson
Journal:  Cell Calcium       Date:  2012-06-06       Impact factor: 6.817

7.  A simple sequential-binding model for calcium puffs.

Authors:  D Swaminathan; G Ullah; P Jung
Journal:  Chaos       Date:  2009-09       Impact factor: 3.642

8.  Modeling Ca2+ feedback on a single inositol 1,4,5-trisphosphate receptor and its modulation by Ca2+ buffers.

Authors:  Jianwei Shuai; John E Pearson; Ian Parker
Journal:  Biophys J       Date:  2008-07-18       Impact factor: 4.033

9.  Data-driven modeling of mitochondrial dysfunction in Alzheimer's disease.

Authors:  Patrick Toglia; Angelo Demuro; Don-On Daniel Mak; Ghanim Ullah
Journal:  Cell Calcium       Date:  2018-09-12       Impact factor: 6.817

10.  Mean field strategies induce unrealistic non-linearities in calcium puffs.

Authors:  Guillermo Solovey; Daniel Fraiman; Silvina Ponce Dawson
Journal:  Front Physiol       Date:  2011-08-01       Impact factor: 4.566

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