Literature DB >> 18641077

Modeling Ca2+ feedback on a single inositol 1,4,5-trisphosphate receptor and its modulation by Ca2+ buffers.

Jianwei Shuai1, John E Pearson, Ian Parker.   

Abstract

The inositol 1,4,5-trisphosphate receptor/channel (IP(3)R) is a major regulator of intracellular Ca(2+) signaling, and liberates Ca(2+) ions from the endoplasmic reticulum in response to binding at cytosolic sites for both IP(3) and Ca(2+). Although the steady-state gating properties of the IP(3)R have been extensively studied and modeled under conditions of fixed [IP(3)] and [Ca(2+)], little is known about how Ca(2+) flux through a channel may modulate the gating of that same channel by feedback onto activating and inhibitory Ca(2+) binding sites. We thus simulated the dynamics of Ca(2+) self-feedback on monomeric and tetrameric IP(3)R models. A major conclusion is that self-activation depends crucially on stationary cytosolic Ca(2+) buffers that slow the collapse of the local [Ca(2+)] microdomain after closure. This promotes burst-like reopenings by the rebinding of Ca(2+) to the activating site; whereas inhibitory actions are substantially independent of stationary buffers but are strongly dependent on the location of the inhibitory Ca(2+) binding site on the IP(3)R in relation to the channel pore.

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Year:  2008        PMID: 18641077      PMCID: PMC2553123          DOI: 10.1529/biophysj.108.137182

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  50 in total

1.  Stochastic properties of Ca(2+) release of inositol 1,4,5-trisphosphate receptor clusters.

Authors:  Jian-Wei Shuai; Peter Jung
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

2.  Optimal ion channel clustering for intracellular calcium signaling.

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Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-07       Impact factor: 11.205

3.  Buffer kinetics shape the spatiotemporal patterns of IP3-evoked Ca2+ signals.

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Journal:  J Physiol       Date:  2003-10-10       Impact factor: 5.182

4.  Release currents of IP(3) receptor channel clusters and concentration profiles.

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Review 5.  IP(3) receptors: the search for structure.

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Journal:  Trends Biochem Sci       Date:  2004-04       Impact factor: 13.807

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Journal:  Cell Calcium       Date:  2004-05       Impact factor: 6.817

7.  Spatiotemporal patterning of IP3-mediated Ca2+ signals in Xenopus oocytes by Ca2+-binding proteins.

Authors:  Sheila L Dargan; Beat Schwaller; Ian Parker
Journal:  J Physiol       Date:  2004-01-30       Impact factor: 5.182

8.  On the role of stochastic channel behavior in intracellular Ca2+ dynamics.

Authors:  Martin Falcke
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

9.  Buffers and oscillations in intracellular Ca2+ dynamics.

Authors:  Martin Falcke
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

10.  Spontaneous channel activity of the inositol 1,4,5-trisphosphate (InsP3) receptor (InsP3R). Application of allosteric modeling to calcium and InsP3 regulation of InsP3R single-channel gating.

Authors:  Don-On Daniel Mak; Sean M J McBride; J Kevin Foskett
Journal:  J Gen Physiol       Date:  2003-11       Impact factor: 4.086

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  18 in total

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Journal:  Nat Rev Neurosci       Date:  2012-02-08       Impact factor: 34.870

2.  Stochastic simulation of calcium microdomains in the vicinity of an L-type calcium channel.

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Journal:  Eur Biophys J       Date:  2009-07-01       Impact factor: 1.733

3.  Stochastic contribution for the coding of agonist induced calcium oscillation in hepatocytes.

Authors:  Lin Ji; Meng Cheng; Haizhou Zhang
Journal:  Eur Biophys J       Date:  2013-05-08       Impact factor: 1.733

4.  Frequency and relative prevalence of calcium blips and puffs in a model of small IP₃R clusters.

Authors:  Hong Qi; Yandong Huang; Sten Rüdiger; Jianwei Shuai
Journal:  Biophys J       Date:  2014-06-03       Impact factor: 4.033

5.  Emergence of ion channel modal gating from independent subunit kinetics.

Authors:  Brendan A Bicknell; Geoffrey J Goodhill
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-22       Impact factor: 11.205

6.  Multi-scale data-driven modeling and observation of calcium puffs.

Authors:  Ghanim Ullah; Ian Parker; Don-On Daniel Mak; John E Pearson
Journal:  Cell Calcium       Date:  2012-06-06       Impact factor: 6.817

7.  Calcium domains around single and clustered IP3 receptors and their modulation by buffers.

Authors:  S Rüdiger; Ch Nagaiah; G Warnecke; J W Shuai
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

8.  Intra-cluster percolation of calcium signals.

Authors:  Guillermo Solovey; Silvina Ponce Dawson
Journal:  PLoS One       Date:  2010-02-18       Impact factor: 3.240

9.  Calcium signals driven by single channel noise.

Authors:  Alexander Skupin; Helmut Kettenmann; Martin Falcke
Journal:  PLoS Comput Biol       Date:  2010-08-05       Impact factor: 4.475

10.  Unitary Ca(2+) current through recombinant type 3 InsP(3) receptor channels under physiological ionic conditions.

Authors:  Horia Vais; J Kevin Foskett; Don-On Daniel Mak
Journal:  J Gen Physiol       Date:  2010-11-15       Impact factor: 4.086

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