Literature DB >> 27154029

Mode switching of Inositol 1,4,5-trisphosphate receptor channel shapes the Spatiotemporal scales of Ca2+ signals.

Ghanim Ullah1, Aman Ullah2.   

Abstract

The inositol 1,4,5-trisphosphate (InsP3) receptor (InsP3R) channel is crucial for the generation and modulation of highly specific intracellular Ca2+ signals performing numerous functions in animal cells. However, the single channel behavior during Ca2+ signals of different spatiotemporal scales is not well understood. To elucidate the correlation between the gating dynamics of single InsP3Rs and spatiotemporal Ca2+ patterns, we simulate a cluster of InsP3Rs under varying ligand concentrations and extract comprehensive gating statistics of all channels during events of different sizes and durations. Our results show that channels gating predominantly in the low activity mode with negligible occupancy of intermediate and high modes leads to single channel Ca2+ release event blips. Increasing occupancies of intermediate and high modes results in events with increasing size. When the channel has more than 50% probability of gating in the intermediate and high modes, the cluster generates very large puffs that would most likely result in global Ca2+ signals. The size, duration and frequency of Ca2+ signals all increase linearly with the total probability of channel gating in the intermediate and high modes. To our knowledge, this is the first study that quantitatively relates the modal characteristics of InsP3R to the shaping of different spatiotemporal scales of Ca2+ signals.

Entities:  

Keywords:  Ca 2+ signaling; Inositol 1,4,5-trisphosphate receptor; Modal gating; Multi-scales

Mesh:

Substances:

Year:  2016        PMID: 27154029      PMCID: PMC5059592          DOI: 10.1007/s10867-016-9419-2

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  32 in total

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Authors:  E Neher
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4.  Mode switching is the major mechanism of ligand regulation of InsP3 receptor calcium release channels.

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5.  Optical single-channel recording by imaging Ca2+ flux through individual ion channels: theoretical considerations and limits to resolution.

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8.  Spontaneous channel activity of the inositol 1,4,5-trisphosphate (InsP3) receptor (InsP3R). Application of allosteric modeling to calcium and InsP3 regulation of InsP3R single-channel gating.

Authors:  Don-On Daniel Mak; Sean M J McBride; J Kevin Foskett
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Authors:  Horia Vais; J Kevin Foskett; Ghanim Ullah; John E Pearson; Don-On Daniel Mak
Journal:  J Gen Physiol       Date:  2012-11-12       Impact factor: 4.086

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Authors:  Martin Rückl; Ian Parker; Jonathan S Marchant; Chamakuri Nagaiah; Friedrich W Johenning; Sten Rüdiger
Journal:  PLoS Comput Biol       Date:  2015-01-08       Impact factor: 4.475

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2.  TraceSpecks: A Software for Automated Idealization of Noisy Patch-Clamp and Imaging Data.

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3.  Data-driven modeling of mitochondrial dysfunction in Alzheimer's disease.

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4.  Analyzing optical imaging of Ca2+ signals via TIRF microscopy: The limits on resolution due to chemical rates and depth of the channels.

Authors:  Patrick Toglia; Ghanim Ullah; John E Pearson
Journal:  Cell Calcium       Date:  2017-08-31       Impact factor: 6.817

5.  High expression of type I inositol 1,4,5-trisphosphate receptor in the kidney of rats with hepatorenal syndrome.

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6.  Modelling modal gating of ion channels with hierarchical Markov models.

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  6 in total

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