Literature DB >> 16510895

Are molecular cytogenetics and bioinformatics suggesting diverging models of ancestral mammalian genomes?

Lutz Froenicke1, Montserrat Garcia Caldés, Alexander Graphodatsky, Stefan Müller, Leslie A Lyons, Terence J Robinson, Marianne Volleth, Fengtang Yang, Johannes Wienberg.   

Abstract

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Year:  2006        PMID： 16510895      PMCID： PMC1415215          DOI： 10.1101/gr.3955206

Source DB:  PubMed          Journal:  Genome Res        ISSN： 1088-9051            Impact factor:   9.043


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  28 in total

1.  Genome-scale evolution: reconstructing gene orders in the ancestral species.

Authors:  Guillaume Bourque; Pavel A Pevzner
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

2.  Use of flow-sorted canine chromosomes in the assignment of canine linkage, radiation hybrid, and syntenic groups to chromosomes: refinement and verification of the comparative chromosome map for dog and human.

Authors:  D R Sargan; F Yang; M Squire; B S Milne; P C O'Brien; M A Ferguson-Smith
Journal:  Genomics       Date:  2000-10-15       Impact factor: 5.736

3.  The origin of human chromosome 1 and its homologs in placental mammals.

Authors:  William J Murphy; Lutz Frönicke; Stephen J O'Brien; Roscoe Stanyon
Journal:  Genome Res       Date:  2003-07-17       Impact factor: 9.043

4.  Chromosomal phylogeny and evolution of gibbons (Hylobatidae).

Authors:  Stefan Müller; Melanie Hollatz; Johannes Wienberg
Journal:  Hum Genet       Date:  2003-09-03       Impact factor: 4.132

5.  A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships.

Authors:  Heather Amrine-Madsen; Klaus-Peter Koepfli; Robert K Wayne; Mark S Springer
Journal:  Mol Phylogenet Evol       Date:  2003-08       Impact factor: 4.286

6.  Reciprocal chromosome painting among human, aardvark, and elephant (superorder Afrotheria) reveals the likely eutherian ancestral karyotype.

Authors:  F Yang; E Z Alkalaeva; P L Perelman; A T Pardini; W R Harrison; P C M O'Brien; B Fu; A S Graphodatsky; M A Ferguson-Smith; T J Robinson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-24       Impact factor: 11.205

7.  Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution.

Authors:  Pavel Pevzner; Glenn Tesler
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-16       Impact factor: 11.205

8.  A chromosome painting test of the basal eutherian karyotype.

Authors:  Marta Svartman; Gary Stone; John E Page; Roscoe Stanyon
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

9.  Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution.

Authors: 
Journal:  Nature       Date:  2004-12-09       Impact factor: 49.962

10.  Reconstruction of the ancestral karyotype of eutherian mammals.

Authors:  F Richard; M Lombard; B Dutrillaux
Journal:  Chromosome Res       Date:  2003       Impact factor: 4.620
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  31 in total

1.  Reconstruction and evolutionary history of eutherian chromosomes.

Authors:  Jaebum Kim; Marta Farré; Loretta Auvil; Boris Capitanu; Denis M Larkin; Jian Ma; Harris A Lewin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-19       Impact factor: 11.205

2.  Cross-species chromosome painting among camel, cattle, pig and human: further insights into the putative Cetartiodactyla ancestral karyotype.

Authors:  Gabriel Balmus; Vladimir A Trifonov; Larisa S Biltueva; Patricia C M O'Brien; Elena S Alkalaeva; Beiyuan Fu; Julian A Skidmore; Twink Allen; Alexander S Graphodatsky; Fengtang Yang; Malcolm A Ferguson-Smith
Journal:  Chromosome Res       Date:  2007-06-29       Impact factor: 5.239

3.  The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction.

Authors:  Guillaume Bourque; Glenn Tesler; Pavel A Pevzner
Journal:  Genome Res       Date:  2006-03       Impact factor: 9.043

Review 4.  Addressing chromosome evolution in the whole-genome sequence era.

Authors:  Thomas Faraut
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

5.  Divergent patterns of breakpoint reuse in Muroid rodents.

Authors:  E E Mlynarski; C J Obergfell; M J O'Neill; R J O'Neill
Journal:  Mamm Genome       Date:  2009-12-22       Impact factor: 2.957

6.  DUPCAR: reconstructing contiguous ancestral regions with duplications.

Authors:  Jian Ma; Aakrosh Ratan; Brian J Raney; Bernard B Suh; Louxin Zhang; Webb Miller; David Haussler
Journal:  J Comput Biol       Date:  2008-10       Impact factor: 1.479

7.  Reconstruction of the ancestral ferungulate karyotype by electronic chromosome painting (E-painting).

Authors:  Claus Kemkemer; Matthias Kohn; Hildegard Kehrer-Sawatzki; Peter Minich; Josef Högel; Lutz Froenicke; Horst Hameister
Journal:  Chromosome Res       Date:  2007-01-19       Impact factor: 5.239

8.  Breakpoint graphs and ancestral genome reconstructions.

Authors:  Max A Alekseyev; Pavel A Pevzner
Journal:  Genome Res       Date:  2009-02-13       Impact factor: 9.043

9.  Cross-species chromosome painting in Cetartiodactyla: reconstructing the karyotype evolution in key phylogenetic lineages.

Authors:  Anastasia I Kulemzina; Vladimir A Trifonov; Polina L Perelman; Nadezhda V Rubtsova; Vitaly Volobuev; Malcolm A Ferguson-Smith; Roscoe Stanyon; Fengtang Yang; Alexander S Graphodatsky
Journal:  Chromosome Res       Date:  2009-04-07       Impact factor: 5.239

10.  Gene synteny comparisons between different vertebrates provide new insights into breakage and fusion events during mammalian karyotype evolution.

Authors:  Claus Kemkemer; Matthias Kohn; David N Cooper; Lutz Froenicke; Josef Högel; Horst Hameister; Hildegard Kehrer-Sawatzki
Journal:  BMC Evol Biol       Date:  2009-04-24       Impact factor: 3.260
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