Literature DB >> 16309778

Global synthetic-lethality analysis and yeast functional profiling.

Siew Loon Ooi1, Xuewen Pan, Brian D Peyser, Ping Ye, Pamela B Meluh, Daniel S Yuan, Rafael A Irizarry, Joel S Bader, Forrest A Spencer, Jef D Boeke.   

Abstract

The Saccharomyces genome-deletion project created >5900 'molecularly barcoded' yeast knockout mutants (YKO mutants). The YKO mutant collections have facilitated large-scale analyses of a multitude of mutant phenotypes. For example, both synthetic genetic array (SGA) and synthetic-lethality analysis by microarray (SLAM) methods have been used for synthetic-lethality screens. Global analysis of synthetic lethality promises to identify cellular pathways that 'buffer' each other biologically. The combination of global synthetic-lethality analysis, together with global protein-protein interaction analyses, mRNA expression profiling and functional profiling will, in principle, enable construction of a cellular 'wiring diagram' that will help frame a deeper understanding of human biology and disease.

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Year:  2005        PMID: 16309778     DOI: 10.1016/j.tig.2005.11.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  57 in total

1.  Introduction to focus issue: genetic interactions.

Authors:  Daniel Segrè; Christopher J Marx
Journal:  Chaos       Date:  2010-06       Impact factor: 3.642

2.  Composite synthetic lethal identification of membrane traffic inhibitors.

Authors:  Mara C Duncan; David G Ho; Jing Huang; Michael E Jung; Gregory S Payne
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-02       Impact factor: 11.205

3.  Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions.

Authors:  Robert P St Onge; Ramamurthy Mani; Julia Oh; Michael Proctor; Eula Fung; Ronald W Davis; Corey Nislow; Frederick P Roth; Guri Giaever
Journal:  Nat Genet       Date:  2007-01-07       Impact factor: 38.330

4.  Systematic genome instability screens in yeast and their potential relevance to cancer.

Authors:  Karen W Y Yuen; Cheryl D Warren; Ou Chen; Teresa Kwok; Phil Hieter; Forrest A Spencer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-28       Impact factor: 11.205

5.  A critical process controlled by MalT and OmpR is revealed through synthetic lethality.

Authors:  Sylvia A Reimann; Alan J Wolfe
Journal:  J Bacteriol       Date:  2009-06-05       Impact factor: 3.490

6.  Synthetic growth phenotypes of Escherichia coli lacking ppGpp and transketolase A (tktA) are due to ppGpp-mediated transcriptional regulation of tktB.

Authors:  Rajendran Harinarayanan; Helen Murphy; Michael Cashel
Journal:  Mol Microbiol       Date:  2008-06-04       Impact factor: 3.501

7.  Interactions between stressful environment and gene deletions alleviate the expected average loss of fitness in yeast.

Authors:  Lukasz Jasnos; Katarzyna Tomala; Dorota Paczesniak; Ryszard Korona
Journal:  Genetics       Date:  2008-04       Impact factor: 4.562

8.  Synthetic lethality with the dut defect in Escherichia coli reveals layers of DNA damage of increasing complexity due to uracil incorporation.

Authors:  Helen Ting; Elena A Kouzminova; Andrei Kuzminov
Journal:  J Bacteriol       Date:  2008-06-27       Impact factor: 3.490

9.  The population genetics of X-autosome synthetic lethals and steriles.

Authors:  Joseph Lachance; Norman A Johnson; John R True
Journal:  Genetics       Date:  2011-09-06       Impact factor: 4.562

Review 10.  Drug interactions and the evolution of antibiotic resistance.

Authors:  Pamela J Yeh; Matthew J Hegreness; Aviva Presser Aiden; Roy Kishony
Journal:  Nat Rev Microbiol       Date:  2009-06       Impact factor: 60.633

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