Literature DB >> 16258048

Sampling effects, noise, and photobleaching in temporal image correlation spectroscopy.

David L Kolin1, Santiago Costantino, Paul W Wiseman.   

Abstract

We present an extensive investigation of the accuracy and precision of temporal image correlation spectroscopy (TICS). Using simulations of laser scanning microscopy image time series, we investigate the effect of spatiotemporal sampling, particle density, noise, sampling frequency, and photobleaching of fluorophores on the recovery of transport coefficients and number densities by TICS. We show that the recovery of transport coefficients is usually limited by spatial sampling, while the measurement of accurate number densities is restricted by background noise in an image series. We also demonstrate that photobleaching of the fluorophore causes a consistent overestimation of diffusion coefficients and flow rates, and a severe underestimation of number densities. We derive a bleaching correction equation that removes both of these biases when used to fit temporal autocorrelation functions, without increasing the number of fit parameters. Finally, we image the basal membrane of a CHO cell with EGFP/alpha-actinin, using two-photon microscopy, and analyze a subregion of this series using TICS and apply the bleaching correction. We show that the photobleaching correction can be determined simply by using the average image intensities from the time series, and we use the simulations to provide good estimates of the accuracy and precision of the number density and transport coefficients measured with TICS.

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Year:  2005        PMID: 16258048      PMCID: PMC1367067          DOI: 10.1529/biophysj.105.072322

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  21 in total

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2.  An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells.

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3.  The standard deviation in fluorescence correlation spectroscopy.

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4.  Two-photon image correlation spectroscopy and image cross-correlation spectroscopy.

Authors:  P W Wiseman; J A Squier; M H Ellisman; K R Wilson
Journal:  J Microsc       Date:  2000-10       Impact factor: 1.758

5.  Statistical analysis of fluorescence correlation spectroscopy: the standard deviation and bias.

Authors:  Saveez Saffarian; Elliot L Elson
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

6.  Spatial mapping of integrin interactions and dynamics during cell migration by image correlation microscopy.

Authors:  Paul W Wiseman; Claire M Brown; Donna J Webb; Benedict Hebert; Natalie L Johnson; Jeff A Squier; Mark H Ellisman; A F Horwitz
Journal:  J Cell Sci       Date:  2004-10-12       Impact factor: 5.285

7.  On the measurement of particle number and mobility in nonideal solutions by fluorescence correlation spectroscopy.

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8.  Spatial-temporal studies of membrane dynamics: scanning fluorescence correlation spectroscopy (SFCS).

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Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

9.  Lateral motion of fluorescently labeled acetylcholine receptors in membranes of developing muscle fibers.

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Journal:  Proc Natl Acad Sci U S A       Date:  1976-12       Impact factor: 11.205

10.  Lateral diffusion of an 80,000-dalton glycoprotein in the plasma membrane of murine fibroblasts: relationships to cell structure and function.

Authors:  K Jacobson; D O'Dell; J T August
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  26 in total

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Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

2.  Spatial Intensity Distribution Analysis Reveals Abnormal Oligomerization of Proteins in Single Cells.

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3.  An Intermittent Model for Intracellular Motions of Gold Nanostars by k-Space Scattering Image Correlation.

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Journal:  Biophys J       Date:  2015-12-01       Impact factor: 4.033

4.  k-Space image correlation spectroscopy: a method for accurate transport measurements independent of fluorophore photophysics.

Authors:  David L Kolin; David Ronis; Paul W Wiseman
Journal:  Biophys J       Date:  2006-07-21       Impact factor: 4.033

5.  Spatially resolved fluorescence correlation spectroscopy using a spinning disk confocal microscope.

Authors:  Daniel R Sisan; Richard Arevalo; Catherine Graves; Ryan McAllister; Jeffrey S Urbach
Journal:  Biophys J       Date:  2006-09-01       Impact factor: 4.033

6.  Measurement of monomer-oligomer distributions via fluorescence moment image analysis.

Authors:  Mikhail Sergeev; Santiago Costantino; Paul W Wiseman
Journal:  Biophys J       Date:  2006-08-25       Impact factor: 4.033

7.  Particle image correlation spectroscopy (PICS): retrieving nanometer-scale correlations from high-density single-molecule position data.

Authors:  S Semrau; T Schmidt
Journal:  Biophys J       Date:  2006-11-03       Impact factor: 4.033

8.  Detection and correction of blinking bias in image correlation transport measurements of quantum dot tagged macromolecules.

Authors:  Nela Durisic; Alexia I Bachir; David L Kolin; Benedict Hebert; B Christoffer Lagerholm; Peter Grutter; Paul W Wiseman
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

9.  Measuring diffusion of lipid-like probes in artificial and natural membranes by raster image correlation spectroscopy (RICS): use of a commercial laser-scanning microscope with analog detection.

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10.  Image correlation microscopy for uniform illumination.

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Journal:  J Microsc       Date:  2010-01       Impact factor: 1.758

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