Literature DB >> 16211482

A new amide proton R1rho experiment permits accurate characterization of microsecond time-scale conformational exchange.

Christian Eichmüller1, Nikolai R Skrynnikov.   

Abstract

A new off-resonance spin-lock experiment to record relaxation dispersion profiles of amide protons is presented. The sensitivity-enhanced HSQC-type sequence is designed to minimize the interference from cross-relaxation effects and ensure that the dispersion profiles in the absence of micros-ms time-scale dynamics are flat. Toward this end (i) the proton background is eliminated by sample deuteration (Ishima et al., 1998), (ii) 1H spin lock is applied to two-spin modes 2(H(x)Sin theta + H(z)Cos theta) N(z), and (iii) the tilt angle theta approximately 35 degrees is maintained throughout the series of measurements (Desvaux et al. Mol. Phys., 86 (1995) 1059). The relaxation dispersion profiles recorded in this manner sample a wide range of effective rf field strengths (up to and in excess of 20 kHz) which makes them particularly suitable for studies of motions on the time scale < or = 100 micros. The new experiment has been tested on the Ca2+-loaded regulatory domain of cardiac troponin C. Many residues show pronounced dispersions with remarkably similar correlation times of approximately 30 micros. Furthermore, these residues are localized in the regions that have been previously implicated in conformational changes (Spyracopoulos et al. Biochemistry, 36 (1997) 12138).

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16211482     DOI: 10.1007/s10858-005-0658-y

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  42 in total

1.  Energetics of the induced structural change in a Ca2+ regulatory protein: Ca2+ and troponin I peptide binding to the E41A mutant of the N-domain of skeletal troponin C.

Authors:  R T McKay; L F Saltibus; M X Li; B D Sykes
Journal:  Biochemistry       Date:  2000-10-17       Impact factor: 3.162

2.  Large-scale millisecond intersubunit dynamics in the B subunit homopentamer of the toxin derived from Escherichia coli O157.

Authors:  Anna Yung; W Bruce Turnbull; Arnout P Kalverda; Gary S Thompson; Steve W Homans; Pavel Kitov; David R Bundle
Journal:  J Am Chem Soc       Date:  2003-10-29       Impact factor: 15.419

3.  BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank.

Authors:  Jurgen F Doreleijers; Steve Mading; Dimitri Maziuk; Kassandra Sojourner; Lei Yin; Jun Zhu; John L Markley; Eldon L Ulrich
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

4.  Probing the kinetic landscape of transient peptide-protein interactions by use of peptide (15)n NMR relaxation dispersion spectroscopy: binding of an antithrombin peptide to human prothrombin.

Authors:  Dmitri Tolkatchev; Ping Xu; Feng Ni
Journal:  J Am Chem Soc       Date:  2003-10-15       Impact factor: 15.419

5.  The relationship between amide proton chemical shifts and secondary structure in proteins.

Authors:  T Asakura; K Taoka; M Demura; M P Williamson
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  CPMG sequences with enhanced sensitivity to chemical exchange.

Authors:  C Wang; M J Grey; A G Palmer
Journal:  J Biomol NMR       Date:  2001-12       Impact factor: 2.835

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Calcium binding to the regulatory N-domain of skeletal muscle troponin C occurs in a stepwise manner.

Authors:  M X Li; S M Gagné; S Tsuda; C M Kay; L B Smillie; B D Sykes
Journal:  Biochemistry       Date:  1995-07-04       Impact factor: 3.162

9.  Amide proton relaxation measurements employing a highly deuterated protein.

Authors:  Tobias S Ulmer; Iain D Campbell; Jonathan Boyd
Journal:  J Magn Reson       Date:  2004-02       Impact factor: 2.229

10.  Uniform and residue-specific 15N-labeling of proteins on a highly deuterated background.

Authors:  Jocelyne Fiaux; Eric B Bertelsen; Arthur L Horwich; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

View more
  21 in total

1.  Observation of microsecond time-scale protein dynamics in the presence of Ln3+ ions: application to the N-terminal domain of cardiac troponin C.

Authors:  Christian Eichmüller; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2006-12-19       Impact factor: 2.835

2.  Protein backbone dynamics through 13C'-13Calpha cross-relaxation in NMR spectroscopy.

Authors:  Fabien Ferrage; Philippe Pelupessy; David Cowburn; Geoffrey Bodenhausen
Journal:  J Am Chem Soc       Date:  2006-08-30       Impact factor: 15.419

3.  Protein conformational exchange measured by 1H R1ρ relaxation dispersion of methyl groups.

Authors:  Ulrich Weininger; Annica T Blissing; Janosch Hennig; Alexandra Ahlner; Zhihong Liu; Hans J Vogel; Mikael Akke; Patrik Lundström
Journal:  J Biomol NMR       Date:  2013-08-02       Impact factor: 2.835

Review 4.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

5.  Mechanistic Insights into Microsecond Time-Scale Motion of Solid Proteins Using Complementary 15N and 1H Relaxation Dispersion Techniques.

Authors:  Petra Rovó; Colin A Smith; Diego Gauto; Bert L de Groot; Paul Schanda; Rasmus Linser
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

6.  Quantitative analysis of backbone motion in proteins using MAS solid-state NMR spectroscopy.

Authors:  Veniamin Chevelkov; Uwe Fink; Bernd Reif
Journal:  J Biomol NMR       Date:  2009-07-24       Impact factor: 2.835

Review 7.  Targeting the sarcomere to correct muscle function.

Authors:  Peter M Hwang; Brian D Sykes
Journal:  Nat Rev Drug Discov       Date:  2015-04-17       Impact factor: 84.694

8.  Allosteric switch regulates protein-protein binding through collective motion.

Authors:  Colin A Smith; David Ban; Supriya Pratihar; Karin Giller; Maria Paulat; Stefan Becker; Christian Griesinger; Donghan Lee; Bert L de Groot
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-09       Impact factor: 11.205

9.  Label-free NMR-based dissociation kinetics determination.

Authors:  Pablo Trigo-Mouriño; Christian Griesinger; Donghan Lee
Journal:  J Biomol NMR       Date:  2017-11-16       Impact factor: 2.835

Review 10.  Structures reveal details of small molecule binding to cardiac troponin.

Authors:  Fangze Cai; Monica X Li; Sandra E Pineda-Sanabria; Shorena Gelozia; Steffen Lindert; Frederick West; Brian D Sykes; Peter M Hwang
Journal:  J Mol Cell Cardiol       Date:  2016-11-05       Impact factor: 5.000

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.