Literature DB >> 16925424

Protein backbone dynamics through 13C'-13Calpha cross-relaxation in NMR spectroscopy.

Fabien Ferrage1, Philippe Pelupessy, David Cowburn, Geoffrey Bodenhausen.   

Abstract

Internal dynamics of proteins are usually characterized by the analysis of (15)N relaxation rates that reflect the motions of NH(N) vectors. It was suggested a decade ago that additional information on backbone motions can be obtained by measuring cross-relaxation rates associated with intra-residue C'C(alpha) vectors. Here we propose a new approach to such measurements, based on the observation of the transfer between two-spin orders 2N(z)() and 2N(z)(). This amounts to "anchoring" the and operators to the N(z)() term from the amide of the next residue. In combination with symmetrical reconversion, this method greatly reduces various artifacts. The experiment is carried out on human ubiquitin at 284.1 K, where the correlation time is 7.1 ns. The motions of the C'C(alpha) vector appear more restricted than those of the NH(N) vector.

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Year:  2006        PMID: 16925424      PMCID: PMC2365922          DOI: 10.1021/ja0600577

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  22 in total

1.  Symmetrical reconversion: measuring cross-correlation rates with enhanced accuracy.

Authors:  Philippe Pelupessy; Guillermo Minguez Espallargas; Geoffrey Bodenhausen
Journal:  J Magn Reson       Date:  2003-04       Impact factor: 2.229

2.  Temperature dependence of anisotropic protein backbone dynamics.

Authors:  Tianzhi Wang; Sheng Cai; Erik R P Zuiderweg
Journal:  J Am Chem Soc       Date:  2003-07-16       Impact factor: 15.419

Review 3.  Dynamics-based amplification of RNA function and its characterization by using NMR spectroscopy.

Authors:  Hashim M Al-Hashimi
Journal:  Chembiochem       Date:  2005-09       Impact factor: 3.164

4.  A thorough dynamic interpretation of residual dipolar couplings in ubiquitin.

Authors:  Nils A Lakomek; Teresa Carlomagno; Stefan Becker; Christian Griesinger; Jens Meiler
Journal:  J Biomol NMR       Date:  2006-02       Impact factor: 2.835

5.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

6.  Study of protein dynamics in solution by measurement of (13)C (α)- (13)CO NOE and (13)CO longitudinal relaxation.

Authors:  L Zeng; M W Fischer; E R Zuiderweg
Journal:  J Biomol NMR       Date:  1996-03       Impact factor: 2.835

7.  Measurement of (13)C (α)- (13)CO cross-relaxation rates in (15)N-/ (13)C-labelled proteins.

Authors:  F Cordier; B Brutscher; D Marion
Journal:  J Biomol NMR       Date:  1996-03       Impact factor: 2.835

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

Review 9.  Investigation of protein motions via relaxation measurements.

Authors:  J W Peng; G Wagner
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

10.  Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions.

Authors:  M Piotto; V Saudek; V Sklenár
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

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  12 in total

1.  Self-consistent residual dipolar coupling based model-free analysis for the robust determination of nanosecond to microsecond protein dynamics.

Authors:  Nils-Alexander Lakomek; Korvin F A Walter; Christophe Farès; Oliver F Lange; Bert L de Groot; Helmut Grubmüller; Rafael Brüschweiler; Axel Munk; Stefan Becker; Jens Meiler; Christian Griesinger
Journal:  J Biomol NMR       Date:  2008-06-04       Impact factor: 2.835

2.  Protein proton-proton dynamics from amide proton spin flip rates.

Authors:  Daniel S Weaver; Erik R P Zuiderweg
Journal:  J Biomol NMR       Date:  2009-07-28       Impact factor: 2.835

3.  Triple resonance ¹⁵Ν NMR relaxation experiments for studies of intrinsically disordered proteins.

Authors:  Pavel Srb; Jiří Nováček; Pavel Kadeřávek; Alžbeta Rabatinová; Libor Krásný; Jitka Žídková; Janette Bobálová; Vladimír Sklenář; Lukáš Žídek
Journal:  J Biomol NMR       Date:  2017-10-25       Impact factor: 2.835

Review 4.  In-Cell NMR Spectroscopy of Intrinsically Disordered Proteins.

Authors:  Nicholas Sciolino; David S Burz; Alexander Shekhtman
Journal:  Proteomics       Date:  2019-01-15       Impact factor: 3.984

5.  Accurate sampling of high-frequency motions in proteins by steady-state (15)N-{(1)H} nuclear Overhauser effect measurements in the presence of cross-correlated relaxation.

Authors:  Fabien Ferrage; David Cowburn; Ranajeet Ghose
Journal:  J Am Chem Soc       Date:  2009-05-06       Impact factor: 15.419

Review 6.  A surprising role for conformational entropy in protein function.

Authors:  A Joshua Wand; Veronica R Moorman; Kyle W Harpole
Journal:  Top Curr Chem       Date:  2013

7.  Eta(z)/kappa: a transverse relaxation optimized spectroscopy NMR experiment measuring longitudinal relaxation interference.

Authors:  Daniel S Weaver; Erik R P Zuiderweg
Journal:  J Chem Phys       Date:  2008-04-21       Impact factor: 3.488

8.  Evidence of molecular alignment fluctuations in aqueous dilute liquid crystalline media.

Authors:  Martti Louhivuori; Renee Otten; Tapio Salminen; Arto Annila
Journal:  J Biomol NMR       Date:  2007-08-15       Impact factor: 2.835

Review 9.  Measuring Entropy in Molecular Recognition by Proteins.

Authors:  A Joshua Wand; Kim A Sharp
Journal:  Annu Rev Biophys       Date:  2018-01-18       Impact factor: 12.981

10.  The molecular mechanism of nuclear transport revealed by atomic-scale measurements.

Authors:  Loren E Hough; Kaushik Dutta; Samuel Sparks; Deniz B Temel; Alia Kamal; Jaclyn Tetenbaum-Novatt; Michael P Rout; David Cowburn
Journal:  Elife       Date:  2015-09-15       Impact factor: 8.140

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