Literature DB >> 11824755

CPMG sequences with enhanced sensitivity to chemical exchange.

C Wang1, M J Grey, A G Palmer.   

Abstract

Improved relaxation-compensated Carr-Purcell-Meiboom-Gill pulse sequences are reported for studying chemical exchange of backbone 15N nuclei. In contrast to the original methods [J. P. Loria, M. Rance, and A. G. Palmer, J. Am. Chem. Soc. 121, 2331-2332 (1999)], phenomenological relaxation rate constants obtained using the new sequences do not contain contributions from 1H-1H dipole-dipole interactions. Consequently, detection and quantification of chemical exchange processes are facilitated because the relaxation rate constant in the limit of fast pulsing can be obtained independently from conventional 15N spin relaxation measurements. The advantages of the experiments are demonstrated using basic pancreatic trypsin inhibitor.

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Year:  2001        PMID: 11824755     DOI: 10.1023/a:1013328206498

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  10 in total

1.  Estimating the time scale of chemical exchange of proteins from measurements of transverse relaxation rates in solution.

Authors:  R Ishima; D A Torchia
Journal:  J Biomol NMR       Date:  1999-08       Impact factor: 2.835

2.  Measurement of slow (micros-ms) time scale dynamics in protein side chains by (15)N relaxation dispersion NMR spectroscopy: application to Asn and Gln residues in a cavity mutant of T4 lysozyme.

Authors:  F A Mulder; N R Skrynnikov; B Hon; F W Dahlquist; L E Kay
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

3.  Dynamic studies of a fibronectin type I module pair at three frequencies: Anisotropic modelling and direct determination of conformational exchange.

Authors:  I Q Phan; J Boyd; I D Campbell
Journal:  J Biomol NMR       Date:  1996-12       Impact factor: 2.835

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  Probing slow time scale dynamics at methyl-containing side chains in proteins by relaxation dispersion NMR measurements: application to methionine residues in a cavity mutant of T4 lysozyme.

Authors:  N R Skrynnikov; F A Mulder; B Hon; F W Dahlquist; L E Kay
Journal:  J Am Chem Soc       Date:  2001-05-16       Impact factor: 15.419

6.  A TROSY CPMG sequence for characterizing chemical exchange in large proteins.

Authors:  J P Loria; M Rance; A G Palmer
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

7.  Performance of a neural-network-based determination of amino acid class and secondary structure from 1H-15N NMR data.

Authors:  K Huang; M Andrec; S Heald; P Blake; J H Prestegard
Journal:  J Biomol NMR       Date:  1997-07       Impact factor: 2.835

8.  Disulfide bond isomerization in BPTI and BPTI(G36S): an NMR study of correlated mobility in proteins.

Authors:  G Otting; E Liepinsh; K Wüthrich
Journal:  Biochemistry       Date:  1993-04-13       Impact factor: 3.162

9.  Spectral density function mapping using 15N relaxation data exclusively.

Authors:  N A Farrow; O Zhang; A Szabo; D A Torchia; L E Kay
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

  10 in total
  33 in total

1.  Differential multiple quantum relaxation caused by chemical exchange outside the fast exchange limit.

Authors:  Chunyu Wang; Arthur G Palmer
Journal:  J Biomol NMR       Date:  2002-11       Impact factor: 2.835

2.  NMR detection of multiple transitions to low-populated states in azurin.

Authors:  Dmitry M Korzhnev; B Göran Karlsson; Vladislav Yu Orekhov; Martin Billeter
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

3.  Applications of NMR spin relaxation methods for measuring biological motions.

Authors:  Guruvasuthevan R Thuduppathy; R Blake Hill
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

4.  Accuracy of optimized chemical-exchange parameters derived by fitting CPMG R2 dispersion profiles when R2(0a) not = R2(0b).

Authors:  Rieko Ishima; Dennis A Torchia
Journal:  J Biomol NMR       Date:  2006-04       Impact factor: 2.835

5.  NMR solution structure and backbone dynamics of domain III of the E protein of tick-borne Langat flavivirus suggests a potential site for molecular recognition.

Authors:  Munia Mukherjee; Kaushik Dutta; Mark A White; David Cowburn; Robert O Fox
Journal:  Protein Sci       Date:  2006-06       Impact factor: 6.725

6.  Enhanced accuracy of kinetic information from CT-CPMG experiments by transverse rotating-frame spectroscopy.

Authors:  David Ban; Adam Mazur; Marta G Carneiro; T Michael Sabo; Karin Giller; Leonardus M I Koharudin; Stefan Becker; Angela M Gronenborn; Christian Griesinger; Donghan Lee
Journal:  J Biomol NMR       Date:  2013-08-15       Impact factor: 2.835

Review 7.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

8.  Characterization of conformational and dynamic properties of natively unfolded human and mouse alpha-synuclein ensembles by NMR: implication for aggregation.

Authors:  Kuen-Phon Wu; Seho Kim; David A Fela; Jean Baum
Journal:  J Mol Biol       Date:  2008-03-18       Impact factor: 5.469

9.  Chemical exchange effects during refocusing pulses in constant-time CPMG relaxation dispersion experiments.

Authors:  Wazo Myint; Rieko Ishima
Journal:  J Biomol NMR       Date:  2009-07-19       Impact factor: 2.835

Review 10.  Relaxation dispersion NMR spectroscopy for the study of protein allostery.

Authors:  Patrick J Farber; Anthony Mittermaier
Journal:  Biophys Rev       Date:  2015-02-21
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