Literature DB >> 16204895

High-resolution neutron protein crystallography with radically small crystal volumes: application of perdeuteration to human aldose reductase.

I Hazemann1, M T Dauvergne, M P Blakeley, F Meilleur, M Haertlein, A Van Dorsselaer, A Mitschler, D A A Myles, A Podjarny.   

Abstract

Neutron diffraction data have been collected to 2.2 Angstrom resolution from a small (0.15 mm(3)) crystal of perdeuterated human aldose reductase (h-AR; MW = 36 kDa) in order to help to determine the protonation state of the enzyme. h-AR belongs to the aldo-keto reductase family and is implicated in diabetic complications. Its ternary complexes (h-AR-coenzyme NADPH-selected inhibitor) provide a good model to study both the enzymatic mechanism and inhibition. Here, the successful production of fully deuterated human aldose reductase [h-AR(D)], subsequent crystallization of the ternary complex h-AR(D)-NADPH-IDD594 and neutron Laue data collection at the LADI instrument at ILL using a crystal volume of just 0.15 mm(3) are reported. Neutron data were recorded to 2 Angstrom resolution, with subsequent data analysis using data to 2.2 Angstrom. This is the first fully deuterated enzyme of this size (36 kDa) to be solved by neutron diffraction and represents a milestone in the field, as the crystal volume is at least one order of magnitude smaller than those usually required for other high-resolution neutron structures determined to date. This illustrates the significant increase in the signal-to-noise ratio of data collected from perdeuterated crystals and demonstrates that good-quality neutron data can now be collected from more typical protein crystal volumes. Indeed, the signal-to-noise ratio is then dominated by other sources of instrument background, the nature of which is under investigation. This is important for the design of future instruments, which should take maximum advantage of the reduction in the intrinsic diffraction pattern background from fully deuterated samples.

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Year:  2005        PMID: 16204895     DOI: 10.1107/S0907444905024285

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  25 in total

1.  Comparison of hydrogen determination with X-ray and neutron crystallography in a human aldose reductase-inhibitor complex.

Authors:  M P Blakeley; A Mitschler; I Hazemann; F Meilleur; D A A Myles; A Podjarny
Journal:  Eur Biophys J       Date:  2006-04-19       Impact factor: 1.733

2.  X-ray structure of perdeuterated diisopropyl fluorophosphatase (DFPase): perdeuteration of proteins for neutron diffraction.

Authors:  Marc Michael Blum; Stephen J Tomanicek; Harald John; B Leif Hanson; Heinz Rüterjans; Benno P Schoenborn; Paul Langan; Julian C H Chen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-26

3.  Joint X-ray and neutron refinement with phenix.refine.

Authors:  Pavel V Afonine; Marat Mustyakimov; Ralf W Grosse-Kunstleve; Nigel W Moriarty; Paul Langan; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

4.  Hemoglobin redux: combining neutron and X-ray diffraction with mass spectrometry to analyse the quaternary state of oxidized hemoglobins.

Authors:  Timothy C Mueser; Wendell P Griffith; Andrey Y Kovalevsky; Jingshu Guo; Sean Seaver; Paul Langan; B Leif Hanson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

Review 5.  Neutron Laue macromolecular crystallography.

Authors:  Flora Meilleur; Dean A A Myles; Matthew P Blakeley
Journal:  Eur Biophys J       Date:  2006-08-03       Impact factor: 1.733

6.  Preliminary time-of-flight neutron diffraction study on diisopropyl fluorophosphatase (DFPase) from Loligo vulgaris.

Authors:  Marc-Michael Blum; Alexander Koglin; Heinz Rüterjans; Benno Schoenborn; Paul Langan; Julian C-H Chen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-12-22

7.  Optimizing crystal volume for neutron diffraction: D-xylose isomerase.

Authors:  Edward H Snell; Mark J van der Woerd; Michael Damon; Russell A Judge; Dean A A Myles; Flora Meilleur
Journal:  Eur Biophys J       Date:  2006-05-25       Impact factor: 1.733

8.  Quantum model of catalysis based on a mobile proton revealed by subatomic x-ray and neutron diffraction studies of h-aldose reductase.

Authors:  Matthew P Blakeley; Federico Ruiz; Raul Cachau; Isabelle Hazemann; Flora Meilleur; Andre Mitschler; Stephan Ginell; Pavel Afonine; Oscar N Ventura; Alexandra Cousido-Siah; Michael Haertlein; Andrzej Joachimiak; Dean Myles; Alberto Podjarny
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-04       Impact factor: 11.205

9.  A preliminary neutron crystallographic study of an A-DNA crystal.

Authors:  Ricardo M F Leal; Susana C M Teixeira; Matthew P Blakeley; Edward P Mitchell; V Trevor Forsyth
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-02-12

10.  A preliminary neutron diffraction study of gamma-chymotrypsin.

Authors:  Walter R P Novak; Aaron G Moulin; Matthew P Blakeley; Ilme Schlichting; Gregory A Petsko; Dagmar Ringe
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-02-26
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