Literature DB >> 16724195

Optimizing crystal volume for neutron diffraction: D-xylose isomerase.

Edward H Snell1, Mark J van der Woerd, Michael Damon, Russell A Judge, Dean A A Myles, Flora Meilleur.   

Abstract

Neutron diffraction is uniquely sensitive to hydrogen positions and protonation state. In that context structural information from neutron data is complementary to that provided through X-ray diffraction. However, there are practical obstacles to overcome in fully exploiting the potential of neutron diffraction, i.e. low flux and weak scattering. Several approaches are available to overcome these obstacles and we have investigated the simplest: increasing the diffracting volume of the crystals. Volume is a quantifiable metric that is well suited for experimental design and optimization techniques. By using response surface methods we have optimized the xylose isomerase crystal volume, enabling neutron diffraction while we determined the crystallization parameters with a minimum of experiments. Our results suggest a systematic means of enabling neutron diffraction studies for a larger number of samples that require information on hydrogen position and/or protonation state.

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Year:  2006        PMID: 16724195     DOI: 10.1007/s00249-006-0068-4

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  18 in total

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Authors:  R A Judge; R S Jacobs; T Frazier; E H Snell; M L Pusey
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Journal:  Microgravity Sci Technol       Date:  1994-07       Impact factor: 1.982

Review 4.  Mechanism of action of D-xylose isomerase.

Authors:  B Asbóth; G Náray-Szabó
Journal:  Curr Protein Pept Sci       Date:  2000-11       Impact factor: 3.272

5.  High-resolution neutron protein crystallography with radically small crystal volumes: application of perdeuteration to human aldose reductase.

Authors:  I Hazemann; M T Dauvergne; M P Blakeley; F Meilleur; M Haertlein; A Van Dorsselaer; A Mitschler; D A A Myles; A Podjarny
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-09-28

Review 6.  Comparative studies of protein crystallization by vapour-diffusion and microbatch techniques.

Authors:  N E Chayen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-01-01

7.  X-ray analysis of D-xylose isomerase at 1.9 A: native enzyme in complex with substrate and with a mechanism-designed inactivator.

Authors:  H L Carrell; J P Glusker; V Burger; F Manfre; D Tritsch; J F Biellmann
Journal:  Proc Natl Acad Sci U S A       Date:  1989-06       Impact factor: 11.205

8.  Protein crystallization using incomplete factorial experiments.

Authors:  C W Carter; C W Carter
Journal:  J Biol Chem       Date:  1979-12-10       Impact factor: 5.157

9.  Crystallographic studies of the mechanism of xylose isomerase.

Authors:  G K Farber; A Glasfeld; G Tiraby; D Ringe; G A Petsko
Journal:  Biochemistry       Date:  1989-09-05       Impact factor: 3.162

10.  Xylose isomerase in substrate and inhibitor michaelis states: atomic resolution studies of a metal-mediated hydride shift.

Authors:  Timothy D Fenn; Dagmar Ringe; Gregory A Petsko
Journal:  Biochemistry       Date:  2004-06-01       Impact factor: 3.162

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  5 in total

1.  A quasi-Laue neutron crystallographic study of D-xylose isomerase.

Authors:  Flora Meilleur; Edward H Snell; Mark J van der Woerd; Russell A Judge; Dean A A Myles
Journal:  Eur Biophys J       Date:  2006-05-04       Impact factor: 1.733

Review 2.  Neutron Laue macromolecular crystallography.

Authors:  Flora Meilleur; Dean A A Myles; Matthew P Blakeley
Journal:  Eur Biophys J       Date:  2006-08-03       Impact factor: 1.733

3.  Efficient optimization of crystallization conditions by manipulation of drop volume ratio and temperature.

Authors:  Joseph R Luft; Jennifer R Wolfley; Meriem I Said; Raymond M Nagel; Angela M Lauricella; Jennifer L Smith; Max H Thayer; Christina K Veatch; Edward H Snell; Michael G Malkowski; George T Detitta
Journal:  Protein Sci       Date:  2007-02-27       Impact factor: 6.725

4.  Structural knowledge or X-ray damage? A case study on xylose isomerase illustrating both.

Authors:  Helena Taberman; Charles S Bury; Mark J van der Woerd; Edward H Snell; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2019-06-24       Impact factor: 2.616

Review 5.  Crystallization screening: the influence of history on current practice.

Authors:  Joseph R Luft; Janet Newman; Edward H Snell
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-06-27       Impact factor: 1.056

  5 in total

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