Literature DB >> 18565591

Testing a neural coding hypothesis using surrogate data.

Yoshito Hirata1, Yuichi Katori, Hidetoshi Shimokawa, Hideyuki Suzuki, Timothy A Blenkinsop, Eric J Lang, Kazuyuki Aihara.   

Abstract

Determining how a particular neuron, or population of neurons, encodes information in their spike trains is not a trivial problem, because multiple coding schemes exist and are not necessarily mutually exclusive. Coding schemes generally fall into one of two broad categories, which we refer to as rate and temporal coding. In rate coding schemes, information is encoded in the variations of the average firing rate of the spike train. In contrast, in temporal coding schemes, information is encoded in the specific timing of the individual spikes that comprise the train. Here, we describe a method for testing the presence of temporal encoding of information. Suppose that a set of original spike trains is given. First, surrogate spike trains are generated by randomizing each of the original spike trains subject to the following constraints: the local average firing rate is approximately preserved, while the overall average firing rate and the distribution of primary interspike intervals are perfectly preserved. These constraints ensure that any rate coding of information present in the original spike trains is preserved in the members of the surrogate population. The null-hypothesis is rejected when additional information is found to be present in the original spike trains, implying that temporal coding is present. The method is validated using artificial data, and then demonstrated using real neuronal data.

Mesh:

Year:  2008        PMID: 18565591      PMCID: PMC2529148          DOI: 10.1016/j.jneumeth.2008.05.004

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  29 in total

1.  Temporal coding of visual information in the thalamus.

Authors:  P Reinagel; R C Reid
Journal:  J Neurosci       Date:  2000-07-15       Impact factor: 6.167

2.  A unified approach to the study of temporal, correlational, and rate coding.

Authors:  S Panzeri; S R Schultz
Journal:  Neural Comput       Date:  2001-06       Impact factor: 2.026

3.  Statistical analysis of temporal evolution in single-neuron firing rates.

Authors:  Valérie Ventura; Roberto Carta; Robert E Kass; Sonya N Gettner; Carl R Olson
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Review 4.  Searching for significance in spatio-temporal firing patterns.

Authors:  George L Gerstein
Journal:  Acta Neurobiol Exp (Wars)       Date:  2004       Impact factor: 1.579

5.  Reading a neural code.

Authors:  W Bialek; F Rieke; R R de Ruyter van Steveninck; D Warland
Journal:  Science       Date:  1991-06-28       Impact factor: 47.728

6.  Statistical assessment of time-varying dependency between two neurons.

Authors:  Valérie Ventura; Can Cai; Robert E Kass
Journal:  J Neurophysiol       Date:  2005-10       Impact factor: 2.714

7.  Speed of processing in the human visual system.

Authors:  S Thorpe; D Fize; C Marlot
Journal:  Nature       Date:  1996-06-06       Impact factor: 49.962

8.  Dynamic organization of motor control within the olivocerebellar system.

Authors:  J P Welsh; E J Lang; I Suglhara; R Llinás
Journal:  Nature       Date:  1995-03-30       Impact factor: 49.962

9.  Multiplexing using synchrony in the zebrafish olfactory bulb.

Authors:  Rainer W Friedrich; Christopher J Habermann; Gilles Laurent
Journal:  Nat Neurosci       Date:  2004-07-25       Impact factor: 24.884

10.  Block of inferior olive gap junctional coupling decreases Purkinje cell complex spike synchrony and rhythmicity.

Authors:  Timothy A Blenkinsop; Eric J Lang
Journal:  J Neurosci       Date:  2006-02-08       Impact factor: 6.167

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  1 in total

1.  Detecting multineuronal temporal patterns in parallel spike trains.

Authors:  Kai S Gansel; Wolf Singer
Journal:  Front Neuroinform       Date:  2012-05-22       Impact factor: 4.081

  1 in total

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