Literature DB >> 16150967

Effects of receptor clustering on ligand dissociation kinetics: theory and simulations.

Manoj Gopalakrishnan1, Kimberly Forsten-Williams, Matthew A Nugent, Uwe C Täuber.   

Abstract

Receptor-ligand binding is a critical first step in signal transduction and the duration of the interaction can impact signal generation. In mammalian cells, clustering of receptors may be facilitated by heterogeneous zones of lipids, known as lipid rafts. In vitro experiments show that disruption of rafts significantly alters the dissociation of fibroblast growth factor-2 (FGF-2) from heparan sulfate proteoglycans (HSPGs), co-receptors for FGF-2. In this article, we develop a continuum stochastic formalism to address how receptor clustering might influence ligand rebinding. We find that clusters reduce the effective dissociation rate dramatically when the clusters are dense and the overall surface density of receptors is low. The effect is much less pronounced in the case of high receptor density and shows nonmonotonic behavior with time. These predictions are verified via lattice Monte Carlo simulations. Comparison with FGF-2-HSPG experimental results is made and suggests that the theory could be used to analyze similar biological systems. We further present an analysis of an additional cooperative internal-diffusion model that might be used by other systems to increase ligand retention when simple rebinding is insufficient.

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Year:  2005        PMID: 16150967      PMCID: PMC1366939          DOI: 10.1529/biophysj.105.065300

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  35 in total

1.  Aggregation of IgE-receptor complexes on rat basophilic leukemia cells does not change the intrinsic affinity but can alter the kinetics of the ligand-IgE interaction.

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Journal:  Biochemistry       Date:  1992-06-16       Impact factor: 3.162

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Review 3.  Functional rafts in cell membranes.

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Journal:  Nature       Date:  1997-06-05       Impact factor: 49.962

4.  Competition between solution and cell surface receptors for ligand. Dissociation of hapten bound to surface antibody in the presence of solution antibody.

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Journal:  Biophys J       Date:  1989-11       Impact factor: 4.033

5.  The effect of receptor density on the forward rate constant for binding of ligands to cell surface receptors.

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Journal:  Biophys J       Date:  1987-10       Impact factor: 4.033

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Journal:  Eur Biophys J       Date:  1994       Impact factor: 1.733

7.  The effect of receptor clustering on diffusion-limited forward rate constants.

Authors:  B Goldstein; F W Wiegel
Journal:  Biophys J       Date:  1983-07       Impact factor: 4.033

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Authors:  D Shoup; A Szabo
Journal:  Biophys J       Date:  1982-10       Impact factor: 4.033

9.  Basic fibroblast growth factor binds its receptors, is internalized, and stimulates DNA synthesis in Balb/c3T3 cells in the absence of heparan sulfate.

Authors:  M Fannon; M A Nugent
Journal:  J Biol Chem       Date:  1996-07-26       Impact factor: 5.157

10.  Kinetics of basic fibroblast growth factor binding to its receptor and heparan sulfate proteoglycan: a mechanism for cooperactivity.

Authors:  M A Nugent; E R Edelman
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

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  32 in total

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Review 2.  Long-lasting target binding and rebinding as mechanisms to prolong in vivo drug action.

Authors:  Georges Vauquelin; Steven J Charlton
Journal:  Br J Pharmacol       Date:  2010-10       Impact factor: 8.739

3.  Self-assembled combinatorial encoding nanoarrays for multiplexed biosensing.

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Journal:  Nano Lett       Date:  2007-02       Impact factor: 11.189

4.  Measuring rotational diffusion of MHC class I on live cells by polarized FPR.

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5.  Receptor-Ligand Rebinding Kinetics in Confinement.

Authors:  Aykut Erbaş; Monica Olvera de la Cruz; John F Marko
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Review 6.  Link between a high k on for drug binding and a fast clinical action: to be or not to be?

Authors:  Georges Vauquelin
Journal:  Medchemcomm       Date:  2018-08-16       Impact factor: 3.597

Review 7.  Heparan sulfate-protein binding specificity.

Authors:  M A Nugent; J Zaia; J L Spencer
Journal:  Biochemistry (Mosc)       Date:  2013-07       Impact factor: 2.487

8.  Effects of target binding kinetics on in vivo drug efficacy: koff , kon and rebinding.

Authors:  Georges Vauquelin
Journal:  Br J Pharmacol       Date:  2016-07-04       Impact factor: 8.739

9.  Monte Carlo simulations of plasma membrane corral-induced EGFR clustering.

Authors:  Michelle N Costa; Krishnan Radhakrishnan; Jeremy S Edwards
Journal:  J Biotechnol       Date:  2010-12-15       Impact factor: 3.307

Review 10.  Regulation from within: the cytoskeleton in transmembrane signaling.

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Journal:  Trends Cell Biol       Date:  2012-08-20       Impact factor: 20.808

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