Literature DB >> 21167222

Monte Carlo simulations of plasma membrane corral-induced EGFR clustering.

Michelle N Costa1, Krishnan Radhakrishnan, Jeremy S Edwards.   

Abstract

Experimental evidence suggests that the cell membrane is a highly organized structure that is compartmentalized by the underlying membrane cytoskeleton (MSK). The interaction between the cell membrane and the cytoskeleton led to the "picket-fence" model, which was proposed to explain certain aspects of membrane compartmentalization. This model assumes that the MSK hinders and confines the motion of receptors and lipids to compartments in the membrane. However, the impact of the MSK on receptor clustering, aggregation, and downstream signaling remains unclear. For example, some evidence suggests that the MSK enhances dimerization, while other evidence suggests decreased dimerization and signaling. Herein, we use computational Monte Carlo simulations to examine the effects of MSK density and receptor concentration on receptor dimerization and clustering. Preliminary results suggest that the MSK may have the potential to induce receptor clustering, which is a function of both picket-fence density and receptor concentration.
Copyright © 2010 Elsevier B.V. All rights reserved.

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Year:  2010        PMID: 21167222      PMCID: PMC3822008          DOI: 10.1016/j.jbiotec.2010.12.009

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  67 in total

1.  Actin cytoskeleton-dependent dynamics of the human serotonin1A receptor correlates with receptor signaling.

Authors:  Sourav Ganguly; Thomas J Pucadyil; Amitabha Chattopadhyay
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

Review 2.  Three-dimensional molecular architecture of the plasma-membrane-associated cytoskeleton as reconstructed by freeze-etch electron tomography.

Authors:  Nobuhiro Morone; Chieko Nakada; Yasuhiro Umemura; Jiro Usukura; Akihiro Kusumi
Journal:  Methods Cell Biol       Date:  2008       Impact factor: 1.441

3.  Localization of Fas/CD95 into the lipid rafts on down-modulation of the phosphatidylinositol 3-kinase signaling pathway.

Authors:  Marie Bénéteau; Mathieu Pizon; Benjamin Chaigne-Delalande; Sophie Daburon; Patrick Moreau; Francesca De Giorgi; François Ichas; Amélie Rebillard; Marie-Thérèse Dimanche-Boitrel; Jean-Luc Taupin; Jean-François Moreau; Patrick Legembre
Journal:  Mol Cancer Res       Date:  2008-04       Impact factor: 5.852

4.  Quantitative characterization of the large-scale association of ErbB1 and ErbB2 by flow cytometric homo-FRET measurements.

Authors:  Agnes Szabó; Gábor Horváth; János Szöllosi; Peter Nagy
Journal:  Biophys J       Date:  2008-05-16       Impact factor: 4.033

Review 5.  Equilibrium mechanisms of receptor clustering.

Authors:  Thomas Duke; Ian Graham
Journal:  Prog Biophys Mol Biol       Date:  2009-09-10       Impact factor: 3.667

Review 6.  Hierarchical organization of the plasma membrane: investigations by single-molecule tracking vs. fluorescence correlation spectroscopy.

Authors:  Akihiro Kusumi; Yuki M Shirai; Ikuko Koyama-Honda; Kenichi G N Suzuki; Takahiro K Fujiwara
Journal:  FEBS Lett       Date:  2010-02-20       Impact factor: 4.124

7.  Nanoscale imaging of epidermal growth factor receptor clustering: effects of inhibitors.

Authors:  Abedelnasser Abulrob; Zhengfang Lu; Ewa Baumann; Dusan Vobornik; Rod Taylor; Danica Stanimirovic; Linda J Johnston
Journal:  J Biol Chem       Date:  2009-12-03       Impact factor: 5.157

Review 8.  ErbB receptors and signaling pathways in cancer.

Authors:  Nancy E Hynes; Gwen MacDonald
Journal:  Curr Opin Cell Biol       Date:  2009-02-07       Impact factor: 8.382

9.  Receptor overexpression or inhibition alters cell surface dynamics of EGF-EGFR interaction: new insights from real-time single molecule analysis.

Authors:  Chenxu Yu; Jacob Hale; Kenneth Ritchie; Nagendra K Prasad; Joseph Irudayaraj
Journal:  Biochem Biophys Res Commun       Date:  2008-11-17       Impact factor: 3.575

10.  Actin restricts FcepsilonRI diffusion and facilitates antigen-induced receptor immobilization.

Authors:  Nicholas L Andrews; Keith A Lidke; Janet R Pfeiffer; Alan R Burns; Bridget S Wilson; Janet M Oliver; Diane S Lidke
Journal:  Nat Cell Biol       Date:  2008-07-20       Impact factor: 28.824

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  10 in total

Review 1.  Mathematical simulation of membrane protein clustering for efficient signal transduction.

Authors:  Krishnan Radhakrishnan; Ádám Halász; Meghan M McCabe; Jeremy S Edwards; Bridget S Wilson
Journal:  Ann Biomed Eng       Date:  2012-06-06       Impact factor: 3.934

Review 2.  Single-molecule labeling for studying trafficking of renal transporters.

Authors:  Ankita Bachhawat Jaykumar; Paulo S Caceres; Pablo A Ortiz
Journal:  Am J Physiol Renal Physiol       Date:  2018-07-25

Review 3.  Spatial regulation of receptor tyrosine kinases in development and cancer.

Authors:  Jessica B Casaletto; Andrea I McClatchey
Journal:  Nat Rev Cancer       Date:  2012-05-24       Impact factor: 60.716

4.  Analytical solution of steady-state equations for chemical reaction networks with bilinear rate laws.

Authors:  Adám M Halász; Hong-Jian Lai; Meghan McCabe Pryor; Krishnan Radhakrishnan; Jeremy S Edwards
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2013 Jul-Aug       Impact factor: 3.710

Review 5.  Cellular mechanosensing of the biophysical microenvironment: A review of mathematical models of biophysical regulation of cell responses.

Authors:  Bo Cheng; Min Lin; Guoyou Huang; Yuhui Li; Baohua Ji; Guy M Genin; Vikram S Deshpande; Tian Jian Lu; Feng Xu
Journal:  Phys Life Rev       Date:  2017-06-21       Impact factor: 11.025

Review 6.  Regulation from within: the cytoskeleton in transmembrane signaling.

Authors:  Khuloud Jaqaman; Sergio Grinstein
Journal:  Trends Cell Biol       Date:  2012-08-20       Impact factor: 20.808

7.  Plasma Membrane Organization of Epidermal Growth Factor Receptor in Resting and Ligand-Bound States.

Authors:  Nirmalya Bag; Shuangru Huang; Thorsten Wohland
Journal:  Biophys J       Date:  2015-11-03       Impact factor: 4.033

8.  Confining domains lead to reaction bursts: reaction kinetics in the plasma membrane.

Authors:  Ziya Kalay; Takahiro K Fujiwara; Akihiro Kusumi
Journal:  PLoS One       Date:  2012-03-27       Impact factor: 3.240

9.  Confined diffusion of transmembrane proteins and lipids induced by the same actin meshwork lining the plasma membrane.

Authors:  Takahiro K Fujiwara; Kokoro Iwasawa; Ziya Kalay; Taka A Tsunoyama; Yusuke Watanabe; Yasuhiro M Umemura; Hideji Murakoshi; Kenichi G N Suzuki; Yuri L Nemoto; Nobuhiro Morone; Akihiro Kusumi
Journal:  Mol Biol Cell       Date:  2016-02-10       Impact factor: 4.138

10.  Effect of Spatial Inhomogeneities on the Membrane Surface on Receptor Dimerization and Signal Initiation.

Authors:  Romica Kerketta; Ádám M Halász; Mara P Steinkamp; Bridget S Wilson; Jeremy S Edwards
Journal:  Front Cell Dev Biol       Date:  2016-08-12
  10 in total

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