Literature DB >> 16141067

Inositol hexakisphosphate is bound in the ADAR2 core and required for RNA editing.

Mark R Macbeth1, Heidi L Schubert, Andrew P Vandemark, Arunth T Lingam, Christopher P Hill, Brenda L Bass.   

Abstract

We report the crystal structure of the catalytic domain of human ADAR2, an RNA editing enzyme, at 1.7 angstrom resolution. The structure reveals a zinc ion in the active site and suggests how the substrate adenosine is recognized. Unexpectedly, inositol hexakisphosphate (IP6) is buried within the enzyme core, contributing to the protein fold. Although there are no reports that adenosine deaminases that act on RNA (ADARs) require a cofactor, we show that IP6 is required for activity. Amino acids that coordinate IP6 in the crystal structure are conserved in some adenosine deaminases that act on transfer RNA (tRNA) (ADATs), related enzymes that edit tRNA. Indeed, IP6 is also essential for in vivo and in vitro deamination of adenosine 37 of tRNAala by ADAT1.

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Year:  2005        PMID: 16141067      PMCID: PMC1850959          DOI: 10.1126/science.1113150

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  40 in total

1.  Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2.

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Journal:  Nature       Date:  2000-07-06       Impact factor: 49.962

Review 2.  AdoMet-dependent methylation, DNA methyltransferases and base flipping.

Authors:  X Cheng; R J Roberts
Journal:  Nucleic Acids Res       Date:  2001-09-15       Impact factor: 16.971

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Authors:  A P Gerber; W Keller
Journal:  Trends Biochem Sci       Date:  2001-06       Impact factor: 13.807

4.  Inositol hexakisphosphate promotes dynamin I- mediated endocytosis.

Authors:  Marianne Høy; Alexander M Efanov; Alejandro M Bertorello; Sergei V Zaitsev; Hervør L Olsen; Krister Bokvist; Barbara Leibiger; Ingo B Leibiger; Jean Zwiller; Per-Olof Berggren; Jesper Gromada
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-14       Impact factor: 11.205

5.  Analysis of the RNA-editing reaction of ADAR2 with structural and fluorescent analogues of the GluR-B R/G editing site.

Authors:  O M Stephens; H Y Yi-Brunozzi; P A Beal
Journal:  Biochemistry       Date:  2000-10-10       Impact factor: 3.162

6.  Inositol hexakisphosphate-mediated regulation of glutamate receptors in rat brain sections.

Authors:  B Valastro; M Girard; J Gagné; F Martin; A T Parent; M Baudry; G Massicotte
Journal:  Hippocampus       Date:  2001       Impact factor: 3.899

7.  RNAi is antagonized by A-->I hyper-editing.

Authors:  A D Scadden; C W Smith
Journal:  EMBO Rep       Date:  2001-11-21       Impact factor: 8.807

8.  Specific interaction of IP6 with human Ku70/80, the DNA-binding subunit of DNA-PK.

Authors:  Les A Hanakahi; Stephen C West
Journal:  EMBO J       Date:  2002-04-15       Impact factor: 11.598

9.  Crystal structure of tRNA adenosine deaminase (TadA) from Aquifex aeolicus.

Authors:  Mitsuo Kuratani; Ryohei Ishii; Yoshitaka Bessho; Ryuya Fukunaga; Toru Sengoku; Mikako Shirouzu; Shun-Ichi Sekine; Shigeyuki Yokoyama
Journal:  J Biol Chem       Date:  2005-01-26       Impact factor: 5.157

10.  A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrity.

Authors:  M J Palladino; L P Keegan; M A O'Connell; R A Reenan
Journal:  Cell       Date:  2000-08-18       Impact factor: 41.582

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  203 in total

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Journal:  Mol Biosyst       Date:  2010-06-10

3.  A domain of the actin binding protein Abp140 is the yeast methyltransferase responsible for 3-methylcytidine modification in the tRNA anti-codon loop.

Authors:  Sonia D'Silva; Steffen J Haider; Eric M Phizicky
Journal:  RNA       Date:  2011-04-25       Impact factor: 4.942

Review 4.  Activity regulation of adenosine deaminases acting on RNA (ADARs).

Authors:  Cesare Orlandi; Alessandro Barbon; Sergio Barlati
Journal:  Mol Neurobiol       Date:  2011-11-20       Impact factor: 5.590

5.  Substrate binding in protein-tyrosine phosphatase-like inositol polyphosphatases.

Authors:  Robert J Gruninger; Selina Dobing; Adam D Smith; Lisza M Bruder; L Brent Selinger; Hans-Joachim Wieden; Steven C Mosimann
Journal:  J Biol Chem       Date:  2011-12-02       Impact factor: 5.157

Review 6.  Defining signal transduction by inositol phosphates.

Authors:  Stephen B Shears; Sindura B Ganapathi; Nikhil A Gokhale; Tobias M H Schenk; Huanchen Wang; Jeremy D Weaver; Angelika Zaremba; Yixing Zhou
Journal:  Subcell Biochem       Date:  2012

7.  Expression, purification, crystallization and preliminary X-ray diffraction analysis of the apo form of InsP5 2-K from Arabidopsis thaliana.

Authors:  Jose Ignacio Baños-Sanz; Julia Sanz-Aparicio; Charles A Brearley; Beatriz González
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-05-23

8.  Control of mRNA export and translation termination by inositol hexakisphosphate requires specific interaction with Gle1.

Authors:  Abel R Alcázar-Román; Timothy A Bolger; Susan R Wente
Journal:  J Biol Chem       Date:  2010-04-06       Impact factor: 5.157

Review 9.  Substitutional A-to-I RNA editing.

Authors:  Bjorn-Erik Wulff; Kazuko Nishikura
Journal:  Wiley Interdiscip Rev RNA       Date:  2010 Jul-Aug       Impact factor: 9.957

10.  Structure of Human NatA and Its Regulation by the Huntingtin Interacting Protein HYPK.

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Journal:  Structure       Date:  2018-05-10       Impact factor: 5.006

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