Literature DB >> 20539873

Allosteric regulation of protease activity by small molecules.

Aimee Shen1.   

Abstract

Proteases regulate a plethora of biological processes. Because they irreversibly cleave peptide bonds, the activity of proteases is strictly controlled. While there are many ways to regulate protease activity, an emergent mechanism is the modulation of protease function by small molecules acting at allosteric sites. This mode of regulation holds the potential to allow for the specific and temporal control of a given biological process using small molecules. These compounds also serve as useful tools for studying protein dynamics and function. This review highlights recent advances in identifying and characterizing natural and synthetic small molecule allosteric regulators of proteases and discusses their utility in studies of protease function, drug discovery and protein engineering.

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Year:  2010        PMID: 20539873      PMCID: PMC4356121          DOI: 10.1039/c003913f

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  105 in total

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Authors:  Laura A Banaszynski; Ling-Chun Chen; Lystranne A Maynard-Smith; A G Lisa Ooi; Thomas J Wandless
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4.  Mutation patterns and structural correlates in human immunodeficiency virus type 1 protease following different protease inhibitor treatments.

Authors:  Thomas D Wu; Celia A Schiffer; Matthew J Gonzales; Jonathan Taylor; Rami Kantor; Sunwen Chou; Dennis Israelski; Andrew R Zolopa; W Jeffrey Fessel; Robert W Shafer
Journal:  J Virol       Date:  2003-04       Impact factor: 5.103

Review 5.  The genetics and molecular pathology of Alzheimer's disease: roles of amyloid and the presenilins.

Authors:  D J Selkoe
Journal:  Neurol Clin       Date:  2000-11       Impact factor: 3.806

6.  Trapping moving targets with small molecules.

Authors:  Gregory M Lee; Charles S Craik
Journal:  Science       Date:  2009-04-10       Impact factor: 47.728

7.  Small molecule-induced allosteric activation of the Vibrio cholerae RTX cysteine protease domain.

Authors:  Patrick J Lupardus; Aimee Shen; Matthew Bogyo; K Christopher Garcia
Journal:  Science       Date:  2008-10-10       Impact factor: 47.728

Review 8.  Inflammasomes: guardians of cytosolic sanctity.

Authors:  Mohamed Lamkanfi; Vishva M Dixit
Journal:  Immunol Rev       Date:  2009-01       Impact factor: 12.988

9.  Simplified, enhanced protein purification using an inducible, autoprocessing enzyme tag.

Authors:  Aimee Shen; Patrick J Lupardus; Montse Morell; Elizabeth L Ponder; A Masoud Sadaghiani; K Christopher Garcia; Matthew Bogyo
Journal:  PLoS One       Date:  2009-12-02       Impact factor: 3.240

10.  Mechanistic and structural insights into the proteolytic activation of Vibrio cholerae MARTX toxin.

Authors:  Aimee Shen; Patrick J Lupardus; Victoria E Albrow; Andrew Guzzetta; James C Powers; K Christopher Garcia; Matthew Bogyo
Journal:  Nat Chem Biol       Date:  2009-07       Impact factor: 15.040

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  19 in total

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Authors:  Julie A Zorn; Holger Wille; Dennis W Wolan; James A Wells
Journal:  J Am Chem Soc       Date:  2011-11-17       Impact factor: 15.419

2.  Rational design of inhibitors and activity-based probes targeting Clostridium difficile virulence factor TcdB.

Authors:  Aaron W Puri; Patrick J Lupardus; Edgar Deu; Victoria E Albrow; K Christopher Garcia; Matthew Bogyo; Aimee Shen
Journal:  Chem Biol       Date:  2010-11-24

3.  Properties of protein drug target classes.

Authors:  Simon C Bull; Andrew J Doig
Journal:  PLoS One       Date:  2015-03-30       Impact factor: 3.240

Review 4.  New approaches for dissecting protease functions to improve probe development and drug discovery.

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Journal:  Nat Struct Mol Biol       Date:  2012-01-05       Impact factor: 15.369

Review 5.  Recent progress using systems biology approaches to better understand molecular mechanisms of immunity.

Authors:  Rachel A Gottschalk; Andrew J Martins; Virginie Sjoelund; Bastian R Angermann; Bin Lin; Ronald N Germain
Journal:  Semin Immunol       Date:  2012-12-11       Impact factor: 11.130

6.  Fibrils colocalize caspase-3 with procaspase-3 to foster maturation.

Authors:  Julie A Zorn; Dennis W Wolan; Nicholas J Agard; James A Wells
Journal:  J Biol Chem       Date:  2012-08-07       Impact factor: 5.157

7.  Discovery of Novel Allosteric Eg5 Inhibitors Through Structure-Based Virtual Screening.

Authors:  Wei Zhang; Ling Zhai; Wenyan Lu; Rebecca J Boohaker; Indira Padmalayam; Yonghe Li
Journal:  Chem Biol Drug Des       Date:  2016-03-06       Impact factor: 2.817

Review 8.  The role of toxins in Clostridium difficile infection.

Authors:  Ramyavardhanee Chandrasekaran; D Borden Lacy
Journal:  FEMS Microbiol Rev       Date:  2017-11-01       Impact factor: 16.408

Review 9.  Sulfated Non-Saccharide Glycosaminoglycan Mimetics as Novel Drug Discovery Platform for Various Pathologies.

Authors:  Daniel K Afosah; Rami A Al-Horani
Journal:  Curr Med Chem       Date:  2020       Impact factor: 4.530

10.  Sekikaic acid and lobaric acid target a dynamic interface of the coactivator CBP/p300.

Authors:  Chinmay Y Majmudar; Jonas W Højfeldt; Carl J Arevang; William C Pomerantz; Jessica K Gagnon; Pamela J Schultz; Laura C Cesa; Conor H Doss; Steven P Rowe; Victor Vásquez; Giselle Tamayo-Castillo; Tomasz Cierpicki; Charles L Brooks; David H Sherman; Anna K Mapp
Journal:  Angew Chem Int Ed Engl       Date:  2012-10-08       Impact factor: 15.336

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