Literature DB >> 16133352

The genome and the nucleus: a marriage made by evolution. Genome organisation and nuclear architecture.

Helen A Foster1, Joanna M Bridger.   

Abstract

Genomes are housed within cell nuclei as individual chromosome territories. Nuclei contain several architectural structures that interact and influence the genome. In this review, we discuss how the genome may be organised within its nuclear environment with the position of chromosomes inside nuclei being either influenced by gene density or by chromosomes size. We compare interphase genome organisation in diverse species and reveal similarities and differences between evolutionary divergent organisms. Genome organisation is also discussed with relevance to regulation of gene expression, development and differentiation and asks whether large movements of whole chromosomes are really observed during differentiation. Literature and data describing alterations to genome organisation in disease are also discussed. Further, the nuclear structures that are involved in genome function are described, with reference to what happens to the genome when these structures contain protein from mutant genes as in the laminopathies.

Mesh:

Substances:

Year:  2005        PMID: 16133352     DOI: 10.1007/s00412-005-0016-6

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  213 in total

Review 1.  Review: movement of mRNA from transcription site to nuclear pores.

Authors:  J C Politz; T Pederson
Journal:  J Struct Biol       Date:  2000-04       Impact factor: 2.867

2.  The nucleolus: the magician's hat for cell cycle tricks

Authors: 
Journal:  Curr Opin Cell Biol       Date:  2000-12       Impact factor: 8.382

3.  Domain-specific interactions of human HP1-type chromodomain proteins and inner nuclear membrane protein LBR.

Authors:  Q Ye; I Callebaut; A Pezhman; J C Courvalin; H J Worman
Journal:  J Biol Chem       Date:  1997-06-06       Impact factor: 5.157

Review 4.  Putting the genome on the map.

Authors:  J M Bridger; W A Bickmore
Journal:  Trends Genet       Date:  1998-10       Impact factor: 11.639

5.  DNA replication initiates at domains overlapping with nuclear matrix attachment regions in the xenopus and mouse c-myc promoter.

Authors:  Claire Girard-Reydet; Damien Grégoire; Yegor Vassetzky; Marcel Méchali
Journal:  Gene       Date:  2004-05-12       Impact factor: 3.688

6.  Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription.

Authors:  Séverine Chambeyron; Wendy A Bickmore
Journal:  Genes Dev       Date:  2004-05-15       Impact factor: 11.361

Review 7.  Lamins in disease: why do ubiquitously expressed nuclear envelope proteins give rise to tissue-specific disease phenotypes?

Authors:  C J Hutchison; M Alvarez-Reyes; O A Vaughan
Journal:  J Cell Sci       Date:  2001-01       Impact factor: 5.285

8.  The architecture of chicken chromosome territories changes during differentiation.

Authors:  Sonja Stadler; Verena Schnapp; Robert Mayer; Stefan Stein; Christoph Cremer; Constanze Bonifer; Thomas Cremer; Steffen Dietzel
Journal:  BMC Cell Biol       Date:  2004-11-22       Impact factor: 4.241

9.  Immunological characterization of lamins in the nuclear matrix of onion cells.

Authors:  A Mínguez; S Moreno Díaz de la Espina
Journal:  J Cell Sci       Date:  1993-09       Impact factor: 5.285

10.  Swine Genome Sequencing Consortium (SGSC): a strategic roadmap for sequencing the pig genome.

Authors:  Lawrence B Schook; Jonathan E Beever; Jane Rogers; Sean Humphray; Alan Archibald; Patrick Chardon; Denis Milan; Gary Rohrer; Kellye Eversole
Journal:  Comp Funct Genomics       Date:  2005
View more
  66 in total

Review 1.  The nucleus introduced.

Authors:  Thoru Pederson
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-05-01       Impact factor: 10.005

Review 2.  The role of mechanistic factors in promoting chromosomal translocations found in lymphoid and other cancers.

Authors:  Yu Zhang; Monica Gostissa; Dominic G Hildebrand; Michael S Becker; Cristian Boboila; Roberto Chiarle; Susanna Lewis; Frederick W Alt
Journal:  Adv Immunol       Date:  2010       Impact factor: 3.543

3.  Chromosome territory positioning of conserved homologous chromosomes in different primate species.

Authors:  Laia Mora; Inma Sánchez; Montserrat Garcia; Montserrat Ponsà
Journal:  Chromosoma       Date:  2006-04-11       Impact factor: 4.316

4.  Contrast between extensive variation of 28S rDNA and stability of 5S rDNA and telomeric repeats in the diploid-polyploid Squalius alburnoides complex and in its maternal ancestor Squalius pyrenaicus (Teleostei, Cyprinidae).

Authors:  Marta Gromicho; Jean-Pierre Coutanceau; Catherine Ozouf-Costaz; Maria João Collares-Pereira
Journal:  Chromosome Res       Date:  2006-04-20       Impact factor: 5.239

5.  Epigenomic differentiation in mouse preimplantation nuclei of biparental, parthenote and cloned embryos.

Authors:  Valeria Merico; Jessica Barbieri; Maurizio Zuccotti; Boris Joffe; Thomas Cremer; Carlo Alberto Redi; Irina Solovei; Silvia Garagna
Journal:  Chromosome Res       Date:  2007-05-10       Impact factor: 5.239

6.  Gold-nanoparticle-assisted laser perturbation of chromatin assembly reveals unusual aspects of nuclear architecture within living cells.

Authors:  Aprotim Mazumder; G V Shivashankar
Journal:  Biophys J       Date:  2007-05-11       Impact factor: 4.033

7.  Interindividual differences and alterations in the topology of chromosomes in human sperm nuclei of fertile donors and carriers of reciprocal translocations.

Authors:  Ewa Wiland; Marta Zegało; Maciej Kurpisz
Journal:  Chromosome Res       Date:  2008-02-11       Impact factor: 5.239

Review 8.  Monoallelic gene expression in mammals.

Authors:  Irina S Zakharova; Alexander I Shevchenko; Suren M Zakian
Journal:  Chromosoma       Date:  2009-02-26       Impact factor: 4.316

9.  Epigenetics and chromatin plasticity in embryonic stem cells.

Authors:  Terézia Přikrylová; Jiří Pacherník; Stanislav Kozubek; Eva Bártová
Journal:  World J Stem Cells       Date:  2013-07-26       Impact factor: 5.326

10.  The spatial repositioning of adipogenesis genes is correlated with their expression status in a porcine mesenchymal stem cell adipogenesis model system.

Authors:  Izabela Szczerbal; Helen A Foster; Joanna M Bridger
Journal:  Chromosoma       Date:  2009-07-08       Impact factor: 4.316

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.