Literature DB >> 16607509

Chromosome territory positioning of conserved homologous chromosomes in different primate species.

Laia Mora1, Inma Sánchez, Montserrat Garcia, Montserrat Ponsà.   

Abstract

Interphase chromosomes form distinct spatial domains called chromosome territories (CTs). The position of CTs is known not to be at random and is related to chromosome size and gene density. To elucidate how CTs are arranged in primate proliferating fibroblasts and whether the radial position of CTs has been conserved during primate evolution, several specific CTs corresponding to conserved chromosomes since the Simiiformes (human 6, 12, 13, and 17 homologous CTs) have been studied in 3D preserved interphase nuclei from proliferant cells of two New World monkey species (Lagothrix lagothricha, Saimiri sciureus) and in human by three-dimensional fluorescent in situ hybridization (3D-FISH). Our results indicate that both gene-density and chromosome size influence chromosome territory arrangement in the nucleus. This influence is greater for chromosome-size than for gene-density in the three species studied. A comparison of the radial position of a given CT and its homolog in the species analyzed suggests similar CT distributions for homologous chromosomes. Our statistical analysis using the logit model shows that such homologous positionings cannot, however, be considered identical.

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Year:  2006        PMID: 16607509     DOI: 10.1007/s00412-006-0064-6

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  35 in total

1.  Proximity of chromosomal loci that participate in radiation-induced rearrangements in human cells.

Authors:  M N Nikiforova; J R Stringer; R Blough; M Medvedovic; J A Fagin; Y E Nikiforov
Journal:  Science       Date:  2000-10-06       Impact factor: 47.728

2.  Arrangements of macro- and microchromosomes in chicken cells.

Authors:  F A Habermann; M Cremer; J Walter; G Kreth; J von Hase; K Bauer; J Wienberg; C Cremer; T Cremer; I Solovei
Journal:  Chromosome Res       Date:  2001       Impact factor: 5.239

3.  3D Structure of the human genome: order in randomness.

Authors:  Stanislav Kozubek; Emilie Lukásová; Pavla Jirsová; Irena Koutná; Michal Kozubek; Alena Ganová; Eva Bártová; Martin Falk; Renata Paseková
Journal:  Chromosoma       Date:  2002-09-18       Impact factor: 4.316

4.  Dynamics of DNA double-strand breaks revealed by clustering of damaged chromosome domains.

Authors:  Jacob A Aten; Jan Stap; Przemek M Krawczyk; Carel H van Oven; Ron A Hoebe; Jeroen Essers; Roland Kanaar
Journal:  Science       Date:  2004-01-02       Impact factor: 47.728

Review 5.  Chromosome positioning in the interphase nucleus.

Authors:  Luis Parada; Tom Misteli
Journal:  Trends Cell Biol       Date:  2002-09       Impact factor: 20.808

6.  Localisation and distance between ABL and BCR genes in interphase nuclei of bone marrow cells of control donors and patients with chronic myeloid leukaemia.

Authors:  E Lukásová; S Kozubek; M Kozubek; J Kjeronská; L Rýznar; J Horáková; E Krahulcová; G Horneck
Journal:  Hum Genet       Date:  1997-10       Impact factor: 4.132

7.  Re-modelling of nuclear architecture in quiescent and senescent human fibroblasts.

Authors:  J M Bridger; S Boyle; I R Kill; W A Bickmore
Journal:  Curr Biol       Date:  2000-02-10       Impact factor: 10.834

8.  Evolutionary conserved chromosomal segments in the human karyotype are bounded by unstable chromosome bands.

Authors:  A Ruiz-Herrera; F García; L Mora; J Egozcue; M Ponsà; M Garcia
Journal:  Cytogenet Genome Res       Date:  2005       Impact factor: 1.636

9.  Common themes and cell type specific variations of higher order chromatin arrangements in the mouse.

Authors:  Robert Mayer; Alessandro Brero; Johann von Hase; Timm Schroeder; Thomas Cremer; Steffen Dietzel
Journal:  BMC Cell Biol       Date:  2005-12-07       Impact factor: 4.241

10.  Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes.

Authors:  Andreas Bolzer; Gregor Kreth; Irina Solovei; Daniela Koehler; Kaan Saracoglu; Christine Fauth; Stefan Müller; Roland Eils; Christoph Cremer; Michael R Speicher; Thomas Cremer
Journal:  PLoS Biol       Date:  2005-04-26       Impact factor: 8.029

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  16 in total

1.  Chromosome neighborhood composition determines translocation outcomes after exposure to high-dose radiation in primary cells.

Authors:  Lura Brianna Caddle; Jeremy L Grant; Jin Szatkiewicz; Johann van Hase; Bobbi-Jo Shirley; Joerg Bewersdorf; Christoph Cremer; Alain Arneodo; Andre Khalil; Kevin D Mills
Journal:  Chromosome Res       Date:  2007-11-06       Impact factor: 5.239

2.  Position of human chromosomes is conserved in mouse nuclei indicating a species-independent mechanism for maintaining genome organization.

Authors:  Kundan Sengupta; Jordi Camps; Priya Mathews; Linda Barenboim-Stapleton; Quang Tri Nguyen; Michael J Difilippantonio; Thomas Ried
Journal:  Chromosoma       Date:  2008-06-18       Impact factor: 4.316

3.  Genomic properties of chromosomal bands are linked to evolutionary rearrangements and new centromere formation in primates.

Authors:  Concetta Federico; Anna Maria Pappalardo; Venera Ferrito; Sabrina Tosi; Salvatore Saccone
Journal:  Chromosome Res       Date:  2017-07-17       Impact factor: 5.239

4.  Hierarchical radial and polar organisation of chromosomes in human sperm.

Authors:  N M Millan; P Lau; M Hann; D Ioannou; D Hoffman; M Barrionuevo; W Maxson; S Ory; H G Tempest
Journal:  Chromosome Res       Date:  2012-11-10       Impact factor: 5.239

5.  Wide-scale alterations in interchromosomal organization in breast cancer cells: defining a network of interacting chromosomes.

Authors:  Andrew J Fritz; Branislav Stojkovic; Hu Ding; Jinhui Xu; Sambit Bhattacharya; Daniel Gaile; Ronald Berezney
Journal:  Hum Mol Genet       Date:  2014-05-15       Impact factor: 6.150

6.  Spatial organization of chromosome territories in the interphase nucleus of trisomy 21 cells.

Authors:  Stephan Kemeny; Christophe Tatout; Gaelle Salaun; Céline Pebrel-Richard; Carole Goumy; Natasha Ollier; Eugenie Maurin; Bruno Pereira; Philippe Vago; Laetitia Gouas
Journal:  Chromosoma       Date:  2017-12-14       Impact factor: 4.316

7.  Interphase chromosome arrangement in Arabidopsis thaliana is similar in differentiated and meristematic tissues and shows a transient mirror symmetry after nuclear division.

Authors:  Alexandre Berr; Ingo Schubert
Journal:  Genetics       Date:  2007-04-03       Impact factor: 4.562

8.  Dynamic changes of territories 17 and 18 during EBV-infection of human lymphocytes.

Authors:  Chunxiang Li; Zhongcheng Shi; Liqiu Zhang; Yun Huang; An Liu; Yan Jin; Yang Yu; Jing Bai; Dieyan Chen; Christi Gendron; Xinghan Liu; Songbin Fu
Journal:  Mol Biol Rep       Date:  2009-08-15       Impact factor: 2.316

9.  Positioning of human chromosomes in murine cell hybrids according to synteny.

Authors:  Karen J Meaburn; Robert F Newbold; Joanna M Bridger
Journal:  Chromosoma       Date:  2008-07-24       Impact factor: 4.316

10.  Rapid chromosome territory relocation by nuclear motor activity in response to serum removal in primary human fibroblasts.

Authors:  Ishita S Mehta; Manelle Amira; Amanda J Harvey; Joanna M Bridger
Journal:  Genome Biol       Date:  2010-01-13       Impact factor: 13.583

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