Literature DB >> 17496030

Gold-nanoparticle-assisted laser perturbation of chromatin assembly reveals unusual aspects of nuclear architecture within living cells.

Aprotim Mazumder1, G V Shivashankar.   

Abstract

Chromatin organization within the nucleus is a vital regulator of genome function, yet its mechanical coupling to the nuclear architecture has remained elusive. To directly investigate this coupling, we locally modulated chromatin structure in living cells using nanoparticle-based laser perturbation. Unusual differences in the response of the cell nucleus were observed depending on the nuclear region that was perturbed--the heterochromatin, the euchromatin, and the nuclear envelope. This response varied under different conditions of cellular perturbations such as ATP depletion, apoptosis, and inhibition of histone deacetylases. Our studies implicate heterochromatin organization in imparting mechanical stability to the cell nucleus and suggest that nuclear size and shape are the result of interplay between nuclear and cytoplasmic anchors.

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Year:  2007        PMID: 17496030      PMCID: PMC1959558          DOI: 10.1529/biophysj.106.102202

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  27 in total

1.  Nuclear organization studied with the help of a hypotonic shift: its use permits hydrophilic molecules to enter into living cells.

Authors:  K Koberna; D Stanek; J Malínský; M Eltsov; A Pliss; V Ctrnáctá; S Cermanová; I Raska
Journal:  Chromosoma       Date:  1999-09       Impact factor: 4.316

Review 2.  Mitotic spindle: laser microsurgery in yeast cells.

Authors:  Pedro Carvalho; David Pellman
Journal:  Curr Biol       Date:  2004-09-21       Impact factor: 10.834

3.  Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers.

Authors:  Nick Gilbert; Shelagh Boyle; Heike Fiegler; Kathryn Woodfine; Nigel P Carter; Wendy A Bickmore
Journal:  Cell       Date:  2004-09-03       Impact factor: 41.582

Review 4.  Nuclear structure in cancer cells.

Authors:  Daniele Zink; Andrew H Fischer; Jeffrey A Nickerson
Journal:  Nat Rev Cancer       Date:  2004-09       Impact factor: 60.716

5.  Controlled ablation of microtubules using a picosecond laser.

Authors:  E L Botvinick; V Venugopalan; J V Shah; L H Liaw; M W Berns
Journal:  Biophys J       Date:  2004-09-28       Impact factor: 4.033

6.  Gene order and dynamic domains.

Authors:  Steven T Kosak; Mark Groudine
Journal:  Science       Date:  2004-10-22       Impact factor: 47.728

7.  Activation of a signaling cascade by cytoskeleton stretch.

Authors:  Masako Tamada; Michael P Sheetz; Yasuhiro Sawada
Journal:  Dev Cell       Date:  2004-11       Impact factor: 12.270

8.  In vivo modulation of morphogenetic movements in Drosophila embryos with femtosecond laser pulses.

Authors:  Willy Supatto; Delphine Débarre; Bruno Moulia; Eric Brouzés; Jean-Louis Martin; Emmanuel Farge; Emmanuel Beaurepaire
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-18       Impact factor: 11.205

9.  Demonstration of mechanical connections between integrins, cytoskeletal filaments, and nucleoplasm that stabilize nuclear structure.

Authors:  A J Maniotis; C S Chen; D E Ingber
Journal:  Proc Natl Acad Sci U S A       Date:  1997-02-04       Impact factor: 11.205

10.  Active genes dynamically colocalize to shared sites of ongoing transcription.

Authors:  Cameron S Osborne; Lyubomira Chakalova; Karen E Brown; David Carter; Alice Horton; Emmanuel Debrand; Beatriz Goyenechea; Jennifer A Mitchell; Susana Lopes; Wolf Reik; Peter Fraser
Journal:  Nat Genet       Date:  2004-09-07       Impact factor: 38.330

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  20 in total

1.  Nuclear deformability and telomere dynamics are regulated by cell geometric constraints.

Authors:  Ekta Makhija; D S Jokhun; G V Shivashankar
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

Review 2.  Nuclear mechanics in disease.

Authors:  Monika Zwerger; Chin Yee Ho; Jan Lammerding
Journal:  Annu Rev Biomed Eng       Date:  2011-08-15       Impact factor: 9.590

3.  Fluorescence characterization of the structural heterogeneity of polytene chromosomes.

Authors:  Sunil K Noothi; Mamata Kombrabail; Basuthkar J Rao; G Krishnamoorthy
Journal:  J Fluoresc       Date:  2009-07-24       Impact factor: 2.217

4.  Dynamics of chromatin decondensation reveals the structural integrity of a mechanically prestressed nucleus.

Authors:  Aprotim Mazumder; T Roopa; Aakash Basu; L Mahadevan; G V Shivashankar
Journal:  Biophys J       Date:  2008-06-13       Impact factor: 4.033

5.  Integrin adhesion drives the emergent polarization of active cytoskeletal stresses to pattern cell delamination.

Authors:  C Meghana; Nisha Ramdas; Feroz Meeran Hameed; Madan Rao; G V Shivashankar; Maithreyi Narasimha
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-13       Impact factor: 11.205

6.  Cytoskeletal prestress regulates nuclear shape and stiffness in cardiac myocytes.

Authors:  Hyungsuk Lee; William J Adams; Patrick W Alford; Megan L McCain; Adam W Feinberg; Sean P Sheehy; Josue A Goss; Kevin Kit Parker
Journal:  Exp Biol Med (Maywood)       Date:  2015-04-23

7.  Emergence of a prestressed eukaryotic nucleus during cellular differentiation and development.

Authors:  Aprotim Mazumder; G V Shivashankar
Journal:  J R Soc Interface       Date:  2010-03-31       Impact factor: 4.118

Review 8.  Mechanosensitive mechanisms in transcriptional regulation.

Authors:  Akiko Mammoto; Tadanori Mammoto; Donald E Ingber
Journal:  J Cell Sci       Date:  2012-07-13       Impact factor: 5.285

9.  Correlated spatio-temporal fluctuations in chromatin compaction states characterize stem cells.

Authors:  Shefali Talwar; Abhishek Kumar; Madan Rao; Gautam I Menon; G V Shivashankar
Journal:  Biophys J       Date:  2013-02-05       Impact factor: 4.033

10.  Conformational change in the chromatin remodelling protein MENT.

Authors:  Poh Chee Ong; Sarah J Golding; Mary C Pearce; James A Irving; Sergei A Grigoryev; Debbie Pike; Christopher G Langendorf; Tanya A Bashtannyk-Puhalovich; Stephen P Bottomley; James C Whisstock; Robert N Pike; Sheena McGowan
Journal:  PLoS One       Date:  2009-03-06       Impact factor: 3.240

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