Literature DB >> 16090009

Flexible lipid bilayers in implicit solvent.

Grace Brannigan1, Peter F Philips, Frank L H Brown.   

Abstract

A minimalist simulation model for lipid bilayers is presented. Each lipid is represented by a flexible chain of beads in implicit solvent. The hydrophobic effect is mimicked through an intermolecular pair potential localized at the "water"/hydrocarbon tail interface. This potential guarantees realistic interfacial tensions for lipids in a bilayer geometry. Lipids self-assemble into bilayer structures that display fluidity and elastic properties consistent with experimental model membrane systems. Varying molecular flexibility allows for tuning of elastic moduli and area per molecule over a range of values seen in experimental systems.

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Year:  2005        PMID: 16090009     DOI: 10.1103/PhysRevE.72.011915

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  22 in total

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2.  Large-scale simulations of fluctuating biological membranes.

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3.  An implicit solvent coarse-grained lipid model with correct stress profile.

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Review 4.  Implicit solvent simulation models for biomembranes.

Authors:  Grace Brannigan; Lawrence C-L Lin; Frank L H Brown
Journal:  Eur Biophys J       Date:  2005-09-27       Impact factor: 1.733

5.  A consistent model for thermal fluctuations and protein-induced deformations in lipid bilayers.

Authors:  Grace Brannigan; Frank L H Brown
Journal:  Biophys J       Date:  2005-12-02       Impact factor: 4.033

6.  Contributions of Gaussian curvature and nonconstant lipid volume to protein deformation of lipid bilayers.

Authors:  Grace Brannigan; Frank L H Brown
Journal:  Biophys J       Date:  2006-11-10       Impact factor: 4.033

7.  Entropic forces drive clustering and spatial localization of influenza A M2 during viral budding.

Authors:  Jesper J Madsen; John M A Grime; Jeremy S Rossman; Gregory A Voth
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-27       Impact factor: 11.205

8.  Formation and Properties of a Self-Assembled Nanoparticle-Supported Lipid Bilayer Probed through Molecular Dynamics Simulations.

Authors:  Haoyuan Jing; Yanbin Wang; Parth Rakesh Desai; Kumaran S Ramamurthi; Siddhartha Das
Journal:  Langmuir       Date:  2020-05-12       Impact factor: 3.882

9.  A systematically coarse-grained solvent-free model for quantitative phospholipid bilayer simulations.

Authors:  Zun-Jing Wang; Markus Deserno
Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

Review 10.  Physical Principles of Nanoparticle Cellular Endocytosis.

Authors:  Sulin Zhang; Huajian Gao; Gang Bao
Journal:  ACS Nano       Date:  2015-08-21       Impact factor: 15.881

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