| Literature DB >> 20515115 |
Alex J Sodt1, Teresa Head-Gordon.
Abstract
We develop a coarse-grained parametrization strategy for lipid membranes that we illustrate for a dipalmitoylphosphatidylcholine bilayer. Our coarse-graining approach eliminates the high cost of explicit solvent but maintains more lipid interaction sites. We use a broad attractive tail-tail potential and extract realistic bonded potentials of mean force from all-atom simulations, resulting in a model with a sharp gel to fluid transition, a correct bending modulus, and overall very reasonable dynamics when compared with experiment. We also determine a quantitative stress profile and correct breakdown of contributions from lipid components when compared with detailed all-atom simulation benchmarks, which has been difficult to achieve for implicit membrane models. Such a coarse-grained lipid model will be necessary for efficiently simulating complex constructs of the membrane, such as protein assembly and lipid raft formation, within these nonaqueous chemical environments.Entities:
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Year: 2010 PMID: 20515115 PMCID: PMC2887916 DOI: 10.1063/1.3408285
Source DB: PubMed Journal: J Chem Phys ISSN: 0021-9606 Impact factor: 3.488