Literature DB >> 22225800

Two-component coarse-grained molecular-dynamics model for the human erythrocyte membrane.

He Li1, George Lykotrafitis.   

Abstract

We present a two-component coarse-grained molecular-dynamics model for simulating the erythrocyte membrane. The proposed model possesses the key feature of combing the lipid bilayer and the erythrocyte cytoskeleton, thus showing both the fluidic behavior of the lipid bilayer and the elastic properties of the erythrocyte cytoskeleton. In this model, three types of coarse-grained particles are introduced to represent clusters of lipid molecules, actin junctions, and band-3 complexes, respectively. The proposed model facilitates simulations that span large length scales (approximately micrometers) and timescales (approximately milliseconds). By tuning the interaction potential parameters, we were able to control the diffusivity and bending rigidity of the membrane model. We studied the membrane under shearing and found that at a low shear strain rate, the developed shear stress was due mainly to the spectrin network, whereas the viscosity of the lipid bilayer contributed to the resulting shear stress at higher strain rates. In addition, we investigated the effects of a reduced spectrin network connectivity on the shear modulus of the membrane.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22225800      PMCID: PMC3250682          DOI: 10.1016/j.bpj.2011.11.4012

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  48 in total

1.  Cytoskeleton confinement and tension of red blood cell membranes.

Authors:  N Gov; A G Zilman; S Safran
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2.  Domain growth, budding, and fission in phase-separating self-assembled fluid bilayers.

Authors:  Mohamed Laradji; P B Sunil Kumar
Journal:  J Chem Phys       Date:  2005-12-08       Impact factor: 3.488

3.  Computer simulations of self-assembled membranes.

Authors:  J M Drouffe; A C Maggs; S Leibler
Journal:  Science       Date:  1991-11-29       Impact factor: 47.728

4.  Simulations of the erythrocyte cytoskeleton at large deformation. I. Microscopic models.

Authors:  S K Boey; D H Boal; D E Discher
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

Review 5.  Roles of bilayer material properties in function and distribution of membrane proteins.

Authors:  Thomas J McIntosh; Sidney A Simon
Journal:  Annu Rev Biophys Biomol Struct       Date:  2006

6.  Tunable generic model for fluid bilayer membranes.

Authors:  Ira R Cooke; Kurt Kremer; Markus Deserno
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-07-26

7.  Measurement of erythrocyte membrane elasticity by flicker eigenmode decomposition.

Authors:  H Strey; M Peterson; E Sackmann
Journal:  Biophys J       Date:  1995-08       Impact factor: 4.033

8.  Molecular dynamics simulations of phospholipid bilayers with cholesterol.

Authors:  Christofer Hofsäss; Erik Lindahl; Olle Edholm
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

9.  Molecular dynamics simulation of the formation, structure, and dynamics of small phospholipid vesicles.

Authors:  Siewert J Marrink; Alan E Mark
Journal:  J Am Chem Soc       Date:  2003-12-10       Impact factor: 15.419

10.  Sample preparation and imaging of erythrocyte cytoskeleton with the atomic force microscopy.

Authors:  Fei Liu; Joel Burgess; Hiroshi Mizukami; Agnes Ostafin
Journal:  Cell Biochem Biophys       Date:  2003       Impact factor: 2.194

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  21 in total

1.  Quantifying Shear-Induced Deformation and Detachment of Individual Adherent Sickle Red Blood Cells.

Authors:  Yixiang Deng; Dimitrios P Papageorgiou; Hung-Yu Chang; Sabia Z Abidi; Xuejin Li; Ming Dao; George Em Karniadakis
Journal:  Biophys J       Date:  2018-12-18       Impact factor: 4.033

2.  Erythrocyte membrane model with explicit description of the lipid bilayer and the spectrin network.

Authors:  He Li; George Lykotrafitis
Journal:  Biophys J       Date:  2014-08-05       Impact factor: 4.033

3.  Probing the Twisted Structure of Sickle Hemoglobin Fibers via Particle Simulations.

Authors:  Lu Lu; Xuejin Li; Peter G Vekilov; George Em Karniadakis
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

4.  Antagonistic Behaviors of NMY-1 and NMY-2 Maintain Ring Channels in the C. elegans Gonad.

Authors:  Valerie C Coffman; Torah M Kachur; David B Pilgrim; Adriana T Dawes
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

5.  Mesoscopic Adaptive Resolution Scheme toward Understanding of Interactions between Sickle Cell Fibers.

Authors:  Lu Lu; He Li; Xin Bian; Xuejin Li; George Em Karniadakis
Journal:  Biophys J       Date:  2017-07-11       Impact factor: 4.033

6.  Cytoskeleton Remodeling Induces Membrane Stiffness and Stability Changes of Maturing Reticulocytes.

Authors:  He Li; Jun Yang; Trang T Chu; Renugah Naidu; Lu Lu; Rajesh Chandramohanadas; Ming Dao; George Em Karniadakis
Journal:  Biophys J       Date:  2018-04-24       Impact factor: 4.033

Review 7.  Computational Biomechanics of Human Red Blood Cells in Hematological Disorders.

Authors:  Xuejin Li; He Li; Hung-Yu Chang; George Lykotrafitis; George Em Karniadakis
Journal:  J Biomech Eng       Date:  2017-02-01       Impact factor: 2.097

8.  Modeling of Biomechanics and Biorheology of Red Blood Cells in Type 2 Diabetes Mellitus.

Authors:  Hung-Yu Chang; Xuejin Li; George Em Karniadakis
Journal:  Biophys J       Date:  2017-07-25       Impact factor: 4.033

9.  Lipid bilayer and cytoskeletal interactions in a red blood cell.

Authors:  Zhangli Peng; Xuejin Li; Igor V Pivkin; Ming Dao; George E Karniadakis; Subra Suresh
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-29       Impact factor: 11.205

10.  Dynamic and rheological properties of soft biological cell suspensions.

Authors:  Alireza Yazdani; Xuejin Li; George Em Karniadakis
Journal:  Rheol Acta       Date:  2015-09-03       Impact factor: 2.627

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