Literature DB >> 16326916

A consistent model for thermal fluctuations and protein-induced deformations in lipid bilayers.

Grace Brannigan1, Frank L H Brown.   

Abstract

We present an elastic Hamiltonian for membrane energetics that captures bilayer undulation and peristaltic deformations over all wavelengths, including the short wavelength protrusion regime. The model implies continuous functional forms for thermal undulation and peristaltic amplitudes as a function of wavelength and predicts previously overlooked relationships between these curves. Undulation and peristaltic spectra display excellent agreement with data from both atomistic and coarse-grained models over all simulated length scales. Additionally, the model accurately predicts the bilayer's response to a cylindrical protein inclusion as observed in coarse-grained simulation. This elastic response provides an explanation for gramicidin ion channel lifetime versus membrane thickness data that requires no fit constants. The physical parameters inherent to this picture may be expressed in terms of familiar material properties associated with lipid monolayers. Inclusion of a finite monolayer spontaneous curvature is essential to obtain fully consistent agreement between theory and the full range of available simulation/experimental data.

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Year:  2005        PMID: 16326916      PMCID: PMC1367303          DOI: 10.1529/biophysj.105.075838

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  37 in total

1.  Deformation free energy of bilayer membrane and its effect on gramicidin channel lifetime.

Authors:  H W Huang
Journal:  Biophys J       Date:  1986-12       Impact factor: 4.033

2.  Interaction between inclusions embedded in membranes.

Authors:  H Aranda-Espinoza; A Berman; N Dan; P Pincus; S Safran
Journal:  Biophys J       Date:  1996-08       Impact factor: 4.033

3.  Gramicidin channel kinetics under tension.

Authors:  M Goulian; O N Mesquita; D K Fygenson; C Nielsen; O S Andersen; A Libchaber
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

4.  Membrane stiffness and channel function.

Authors:  J A Lundbaek; P Birn; J Girshman; A J Hansen; O S Andersen
Journal:  Biochemistry       Date:  1996-03-26       Impact factor: 3.162

5.  Energetics of inclusion-induced bilayer deformations.

Authors:  C Nielsen; M Goulian; O S Andersen
Journal:  Biophys J       Date:  1998-04       Impact factor: 4.033

6.  Tunable generic model for fluid bilayer membranes.

Authors:  Ira R Cooke; Kurt Kremer; Markus Deserno
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-07-26

7.  Theoretical analysis of hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin.

Authors:  T A Harroun; W T Heller; T M Weiss; L Yang; H W Huang
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

8.  Effect of chain length and unsaturation on elasticity of lipid bilayers.

Authors:  W Rawicz; K C Olbrich; T McIntosh; D Needham; E Evans
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

9.  Influence of lipid composition on physical properties and peg-mediated fusion of curved and uncurved model membrane vesicles: "nature's own" fusogenic lipid bilayer.

Authors:  M E Haque; T J McIntosh; B R Lentz
Journal:  Biochemistry       Date:  2001-04-10       Impact factor: 3.162

10.  Influence of membrane thickness and ion concentration on the properties of the gramicidin a channel. Autocorrelation, spectral power density, relaxation and single-channel studies.

Authors:  H A Kolb; E Bamberg
Journal:  Biochim Biophys Acta       Date:  1977-01-04
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  40 in total

1.  Interpreting membrane scattering experiments at the mesoscale: the contribution of dissipation within the bilayer.

Authors:  Max C Watson; Frank L H Brown
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

2.  A finite element framework for studying the mechanical response of macromolecules: application to the gating of the mechanosensitive channel MscL.

Authors:  Yuye Tang; Guoxin Cao; Xi Chen; Jejoong Yoo; Arun Yethiraj; Qiang Cui
Journal:  Biophys J       Date:  2006-05-26       Impact factor: 4.033

3.  Contributions of Gaussian curvature and nonconstant lipid volume to protein deformation of lipid bilayers.

Authors:  Grace Brannigan; Frank L H Brown
Journal:  Biophys J       Date:  2006-11-10       Impact factor: 4.033

4.  Corrections to the Saffman-Delbruck mobility for membrane bound proteins.

Authors:  Ali Naji; Alex J Levine; P A Pincus
Journal:  Biophys J       Date:  2007-09-14       Impact factor: 4.033

Review 5.  Vertebrate membrane proteins: structure, function, and insights from biophysical approaches.

Authors:  Daniel J Müller; Nan Wu; Krzysztof Palczewski
Journal:  Pharmacol Rev       Date:  2008-03-05       Impact factor: 25.468

6.  Colloid adsorption onto responsive membranes.

Authors:  Rita S Dias; Per Linse
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

7.  Membrane-protein interactions in a generic coarse-grained model for lipid bilayers.

Authors:  Beate West; Frank L H Brown; Friederike Schmid
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

8.  Interpretation of fluctuation spectra in lipid bilayer simulations.

Authors:  Erik G Brandt; Anthony R Braun; Jonathan N Sachs; John F Nagle; Olle Edholm
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

9.  Entropic forces drive clustering and spatial localization of influenza A M2 during viral budding.

Authors:  Jesper J Madsen; John M A Grime; Jeremy S Rossman; Gregory A Voth
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-27       Impact factor: 11.205

10.  The molecular mechanism of lipid monolayer collapse.

Authors:  Svetlana Baoukina; Luca Monticelli; H Jelger Risselada; Siewert J Marrink; D Peter Tieleman
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-31       Impact factor: 11.205

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