Literature DB >> 16048787

Up hill, down dale: quantitative genetics of curvaceous traits.

Karin Meyer1, Mark Kirkpatrick.   

Abstract

'Repeated' measurements for a trait and individual, taken along some continuous scale such as time, can be thought of as representing points on a curve, where both means and covariances along the trajectory can change, gradually and continually. Such traits are commonly referred to as 'function-valued' (FV) traits. This review shows that standard quantitative genetic concepts extend readily to FV traits, with individual statistics, such as estimated breeding values and selection response, replaced by corresponding curves, modelled by respective functions. Covariance functions are introduced as the FV equivalent to matrices of covariances. Considering the class of functions represented by a regression on the continuous covariable, FV traits can be analysed within the linear mixed model framework commonly employed in quantitative genetics, giving rise to the so-called random regression model. Estimation of covariance functions, either indirectly from estimated covariances or directly from the data using restricted maximum likelihood or Bayesian analysis, is considered. It is shown that direct estimation of the leading principal components of covariance functions is feasible and advantageous. Extensions to multi-dimensional analyses are discussed.

Mesh:

Year:  2005        PMID: 16048787      PMCID: PMC1569513          DOI: 10.1098/rstb.2005.1681

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  38 in total

1.  Solving large test-day models by iteration on data and preconditioned conjugate gradient.

Authors:  M Lidauer; I Strandén; E A Mäntysaari; J Pösö; A Kettunen
Journal:  J Dairy Sci       Date:  1999-12       Impact factor: 4.034

2.  Modeling nonstationary longitudinal data.

Authors:  V Núñez-Antón; D L Zimmerman
Journal:  Biometrics       Date:  2000-09       Impact factor: 2.571

3.  Estimates of genetic parameters for a test day model with random regressions for yield traits of first lactation Holsteins.

Authors:  J Jamrozik; L R Schaeffer
Journal:  J Dairy Sci       Date:  1997-04       Impact factor: 4.034

4.  Genetic parameters of a random regression model for daily feed intake of performance tested French Landrace and Large White growing pigs.

Authors:  U Schnyder; A Hofer; F Labroue; N Künzi
Journal:  Genet Sel Evol       Date:  2001 Nov-Dec       Impact factor: 4.297

5.  Genetic and environmental smoothing of lactation curves with cubic splines.

Authors:  I M White; R Thompson; S Brotherstone
Journal:  J Dairy Sci       Date:  1999-03       Impact factor: 4.034

6.  Restricted maximum likelihood estimation of genetic principal components and smoothed covariance matrices.

Authors:  Karin Meyer; Mark Kirkpatrick
Journal:  Genet Sel Evol       Date:  2005 Jan-Feb       Impact factor: 4.297

7.  The PX-EM algorithm for fast stable fitting of Henderson's mixed model.

Authors:  J L Foulley; D A van Dyk
Journal:  Genet Sel Evol       Date:  2000 Mar-Apr       Impact factor: 4.297

8.  Genetic basis for systems of skeletal quantitative traits: principal component analysis of the canid skeleton.

Authors:  Kevin Chase; David R Carrier; Frederick R Adler; Tyler Jarvik; Elaine A Ostrander; Travis D Lorentzen; Karl G Lark
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-11       Impact factor: 11.205

9.  Response to mass selection when the genotype by environment interaction is modelled as a linear reaction norm.

Authors:  Rebecka Kolmodin; Piter Bijma
Journal:  Genet Sel Evol       Date:  2004 Jul-Aug       Impact factor: 4.297

10.  Multiple trait model combining random regressions for daily feed intake with single measured performance traits of growing pigs.

Authors:  Urs Schnyder; Andreas Hofer; Florence Labroue; Niklaus Künzi
Journal:  Genet Sel Evol       Date:  2002 Jan-Feb       Impact factor: 4.297

View more
  17 in total

Review 1.  Estimation of quantitative genetic parameters.

Authors:  Robin Thompson; Sue Brotherstone; Ian M S White
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-07-29       Impact factor: 6.237

2.  Patterns of quantitative genetic variation in multiple dimensions.

Authors:  Mark Kirkpatrick
Journal:  Genetica       Date:  2008-08-10       Impact factor: 1.082

Review 3.  Applications of population genetics to animal breeding, from wright, fisher and lush to genomic prediction.

Authors:  William G Hill
Journal:  Genetics       Date:  2014-01       Impact factor: 4.562

4.  Mixed effects models for quantitative trait loci mapping with inbred strains.

Authors:  Lara E Bauman; Janet S Sinsheimer; Eric M Sobel; Kenneth Lange
Journal:  Genetics       Date:  2008-09-14       Impact factor: 4.562

Review 5.  Parent-offspring conflict and co-adaptation: behavioural ecology meets quantitative genetics.

Authors:  Per T Smiseth; Jonathan Wright; Mathias Kölliker
Journal:  Proc Biol Sci       Date:  2008-08-22       Impact factor: 5.349

6.  Genotype-covariate interaction effects and the heritability of adult body mass index.

Authors:  Matthew R Robinson; Geoffrey English; Gerhard Moser; Luke R Lloyd-Jones; Marcus A Triplett; Zhihong Zhu; Ilja M Nolte; Jana V van Vliet-Ostaptchouk; Harold Snieder; Tonu Esko; Lili Milani; Reedik Mägi; Andres Metspalu; Patrik K E Magnusson; Nancy L Pedersen; Erik Ingelsson; Magnus Johannesson; Jian Yang; David Cesarini; Peter M Visscher
Journal:  Nat Genet       Date:  2017-07-10       Impact factor: 38.330

7.  Genetic structured antedependence and random regression models applied to the longitudinal feed conversion ratio in growing Large White pigs.

Authors:  V H Huynh-Tran; H Gilbert; I David
Journal:  J Anim Sci       Date:  2017-11       Impact factor: 3.159

8.  Bridging scales in the evolution of infectious disease life histories: application.

Authors:  Nicole Mideo; William A Nelson; Sarah E Reece; Andrew S Bell; Andrew F Read; Troy Day
Journal:  Evolution       Date:  2011-07-21       Impact factor: 3.694

9.  Exploring plasticity in the wild: laying date-temperature reaction norms in the common gull Larus canus.

Authors:  Jon E Brommer; Kalev Rattiste; Alastair J Wilson
Journal:  Proc Biol Sci       Date:  2008-03-22       Impact factor: 5.349

10.  Novel methods for quantifying individual host response to infectious pathogens for genetic analyses.

Authors:  Andrea B Doeschl-Wilson; Steve C Bishop; Ilias Kyriazakis; Beatriz Villanueva
Journal:  Front Genet       Date:  2012-12-14       Impact factor: 4.599

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.