Literature DB >> 1600083

Diffuse x-ray scattering from tropomyosin crystals.

S Chacko1, G N Phillips.   

Abstract

Diffuse scattering analyses are emerging as a technique to extract additional dynamic information from x-ray diffraction data. In fact, when examined carefully, most protein crystals show significant diffuse scattering in addition to the usual Bragg diffraction. This diffuse scattering contains information about the disorder in the crystal that cannot be obtained from the Bragg diffraction data. Diffraction from tropomyosin crystals shows characteristic diffuse scattering streaks that are directly related to motion of the molecules. The structure of tropomyosin to 15 A resolution shows that the limited molecular contacts between molecules allow large conformational fluctuations of up to 8 A amplitude. Models for the three-dimensional motion of tropomyosin have been tested by comparing their predicted diffuse scattering patterns with the experimental data. From the parameters of the successful simulations, we were able to determine the amplitudes, directions, and distances over which the atomic displacements are correlated.

Mesh:

Substances:

Year:  1992        PMID: 1600083      PMCID: PMC1260389          DOI: 10.1016/S0006-3495(92)81934-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  13 in total

1.  Correlations of atomic movements in lysozyme crystals.

Authors:  J B Clarage; M S Clarage; W C Phillips; R M Sweet; D L Caspar
Journal:  Proteins       Date:  1992-02

2.  Tropomyosin: a new asymmetric protein component of the muscle fibril.

Authors:  K Bailey
Journal:  Biochem J       Date:  1948       Impact factor: 3.857

3.  Motions of tropomyosin: characterization of anisotropic motions and coupled displacements in crystals.

Authors:  D Boylan; G N Phillips
Journal:  Biophys J       Date:  1986-01       Impact factor: 4.033

4.  Crystal structure and molecular interactions of tropomyosin.

Authors:  G N Phillips; E E Lattman; P Cummins; K Y Lee; C Cohen
Journal:  Nature       Date:  1979-03-29       Impact factor: 49.962

5.  Tropomyosin crystal structure and muscle regulation.

Authors:  G N Phillips; J P Fillers; C Cohen
Journal:  J Mol Biol       Date:  1986-11-05       Impact factor: 5.469

6.  Coexistence of A- and B-form DNA in a single crystal lattice.

Authors:  J Doucet; J P Benoit; W B Cruse; T Prange; O Kennard
Journal:  Nature       Date:  1989-01-12       Impact factor: 49.962

Review 7.  Fluctuations in protein structure from X-ray diffraction.

Authors:  G A Petsko; D Ringe
Journal:  Annu Rev Biophys Bioeng       Date:  1984

8.  Conformational substates in a protein: structure and dynamics of metmyoglobin at 80 K.

Authors:  H Hartmann; F Parak; W Steigemann; G A Petsko; D R Ponzi; H Frauenfelder
Journal:  Proc Natl Acad Sci U S A       Date:  1982-08       Impact factor: 11.205

9.  Diffraction methods for biological macromolecules. Crystallization in capillary tubes.

Authors:  G N Phillips
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

10.  Liquid-like movements in crystalline insulin.

Authors:  D L Caspar; J Clarage; D M Salunke; M Clarage
Journal:  Nature       Date:  1988-04-14       Impact factor: 49.962

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  15 in total

1.  Evaluating elastic network models of crystalline biological molecules with temperature factors, correlated motions, and diffuse x-ray scattering.

Authors:  Demian Riccardi; Qiang Cui; George N Phillips
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

2.  Acoustic vibrations contribute to the diffuse scatter produced by ribosome crystals.

Authors:  Yury S Polikanov; Peter B Moore
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-09-26

3.  Ensemble refinement of protein crystal structures: validation and application.

Authors:  Elena J Levin; Dmitry A Kondrashov; Gary E Wesenberg; George N Phillips
Journal:  Structure       Date:  2007-09       Impact factor: 5.006

4.  Affinity and structure of complexes of tropomyosin and caldesmon domains.

Authors:  E J Hnath; C L Wang; P A Huber; S B Marston; G N Phillips
Journal:  Biophys J       Date:  1996-10       Impact factor: 4.033

5.  Three-dimensional diffuse x-ray scattering from crystals of Staphylococcal nuclease.

Authors:  M E Wall; S E Ealick; S M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-10       Impact factor: 11.205

6.  Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering.

Authors:  Michael E Wall; Andrew H Van Benschoten; Nicholas K Sauter; Paul D Adams; James S Fraser; Thomas C Terwilliger
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-01       Impact factor: 11.205

Review 7.  X-ray Scattering Studies of Protein Structural Dynamics.

Authors:  Steve P Meisburger; William C Thomas; Maxwell B Watkins; Nozomi Ando
Journal:  Chem Rev       Date:  2017-05-30       Impact factor: 60.622

8.  Diffuse X-ray scattering to model protein motions.

Authors:  Michael E Wall; Paul D Adams; James S Fraser; Nicholas K Sauter
Journal:  Structure       Date:  2014-02-04       Impact factor: 5.006

9.  Measuring and modeling diffuse scattering in protein X-ray crystallography.

Authors:  Andrew H Van Benschoten; Lin Liu; Ana Gonzalez; Aaron S Brewster; Nicholas K Sauter; James S Fraser; Michael E Wall
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

Review 10.  Principles of protein folding--a perspective from simple exact models.

Authors:  K A Dill; S Bromberg; K Yue; K M Fiebig; D P Yee; P D Thomas; H S Chan
Journal:  Protein Sci       Date:  1995-04       Impact factor: 6.725

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