Literature DB >> 15989950

Structural basis for the function of the ribosomal L7/12 stalk in factor binding and GTPase activation.

Mihaela Diaconu1, Ute Kothe, Frank Schlünzen, Niels Fischer, Jörg M Harms, Alexander G Tonevitsky, Holger Stark, Marina V Rodnina, Markus C Wahl.   

Abstract

The L7/12 stalk of the large subunit of bacterial ribosomes encompasses protein L10 and multiple copies of L7/12. We present crystal structures of Thermotoga maritima L10 in complex with three L7/12 N-terminal-domain dimers, refine the structure of an archaeal L10E N-terminal domain on the 50S subunit, and identify these elements in cryo-electron-microscopic reconstructions of Escherichia coli ribosomes. The mobile C-terminal helix alpha8 of L10 carries three L7/12 dimers in T. maritima and two in E. coli, in concordance with the different length of helix alpha8 of L10 in these organisms. The stalk is organized into three elements (stalk base, L10 helix alpha8-L7/12 N-terminal-domain complex, and L7/12 C-terminal domains) linked by flexible connections. Highly mobile L7/12 C-terminal domains promote recruitment of translation factors to the ribosome and stimulate GTP hydrolysis by the ribosome bound factors through stabilization of their active GTPase conformation.

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Year:  2005        PMID: 15989950     DOI: 10.1016/j.cell.2005.04.015

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  171 in total

1.  Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome.

Authors:  Jie Zhou; Laura Lancaster; Sergei Trakhanov; Harry F Noller
Journal:  RNA       Date:  2011-12-20       Impact factor: 4.942

2.  Archaeal ribosomal stalk protein interacts with translation factors in a nucleotide-independent manner via its conserved C terminus.

Authors:  Naoko Nomura; Takayoshi Honda; Kentaro Baba; Takao Naganuma; Takehito Tanzawa; Fumio Arisaka; Masanori Noda; Susumu Uchiyama; Isao Tanaka; Min Yao; Toshio Uchiumi
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-21       Impact factor: 11.205

3.  A conserved proline switch on the ribosome facilitates the recruitment and binding of trGTPases.

Authors:  Li Wang; Fang Yang; Dejiu Zhang; Zhi Chen; Rui-Ming Xu; Knud H Nierhaus; Weimin Gong; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2012-03-11       Impact factor: 15.369

Review 4.  Evolutionary optimization of speed and accuracy of decoding on the ribosome.

Authors:  Ingo Wohlgemuth; Corinna Pohl; Joerg Mittelstaet; Andrey L Konevega; Marina V Rodnina
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

5.  Optimization of speed and accuracy of decoding in translation.

Authors:  Ingo Wohlgemuth; Corinna Pohl; Marina V Rodnina
Journal:  EMBO J       Date:  2010-09-14       Impact factor: 11.598

6.  Modular domains of the Dicistroviridae intergenic internal ribosome entry site.

Authors:  Christopher J Jang; Eric Jan
Journal:  RNA       Date:  2010-04-27       Impact factor: 4.942

7.  Conformational sampling of aminoacyl-tRNA during selection on the bacterial ribosome.

Authors:  Peter Geggier; Richa Dave; Michael B Feldman; Daniel S Terry; Roger B Altman; James B Munro; Scott C Blanchard
Journal:  J Mol Biol       Date:  2010-04-29       Impact factor: 5.469

Review 8.  Ribosomal translocation: one step closer to the molecular mechanism.

Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  ACS Chem Biol       Date:  2009-02-20       Impact factor: 5.100

Review 9.  Fidelity at the molecular level: lessons from protein synthesis.

Authors:  Hani S Zaher; Rachel Green
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

10.  Near Saturation of Ribosomal L7/L12 Binding Sites with Ternary Complexes in Slowly Growing E. coli.

Authors:  Mainak Mustafi; James C Weisshaar
Journal:  J Mol Biol       Date:  2019-04-30       Impact factor: 5.469

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