Literature DB >> 19239893

Fidelity at the molecular level: lessons from protein synthesis.

Hani S Zaher1, Rachel Green.   

Abstract

The faithful and rapid translation of genetic information into peptide sequences is an indispensable property of the ribosome. The mechanistic understanding of strategies used by the ribosome to achieve both speed and fidelity during translation results from nearly a half century of biochemical and structural studies. Emerging from these studies is the common theme that the ribosome uses local as well as remote conformational switches to govern induced-fit mechanisms that ensure accuracy in codon recognition during both tRNA selection and translation termination.

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Year:  2009        PMID: 19239893      PMCID: PMC3691815          DOI: 10.1016/j.cell.2009.01.036

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  121 in total

1.  Selection of tRNA by the ribosome requires a transition from an open to a closed form.

Authors:  James M Ogle; Frank V Murphy; Michael J Tarry; V Ramakrishnan
Journal:  Cell       Date:  2002-11-27       Impact factor: 41.582

2.  Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy.

Authors:  Mikel Valle; Andrey Zavialov; Wen Li; Scott M Stagg; Jayati Sengupta; Rikke C Nielsen; Poul Nissen; Stephen C Harvey; Måns Ehrenberg; Joachim Frank
Journal:  Nat Struct Biol       Date:  2003-10-19

3.  Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.

Authors:  Mikel Valle; Jayati Sengupta; Neil K Swami; Robert A Grassucci; Nils Burkhardt; Knud H Nierhaus; Rajendra K Agrawal; Joachim Frank
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

Review 4.  Insights into the decoding mechanism from recent ribosome structures.

Authors:  James M Ogle; Andrew P Carter; V Ramakrishnan
Journal:  Trends Biochem Sci       Date:  2003-05       Impact factor: 13.807

5.  Structure of the Escherichia coli ribosomal termination complex with release factor 2.

Authors:  Bruno P Klaholz; Tillmann Pape; Andrey V Zavialov; Alexander G Myasnikov; Elena V Orlova; Bente Vestergaard; Måns Ehrenberg; Marin van Heel
Journal:  Nature       Date:  2003-01-02       Impact factor: 49.962

6.  Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase.

Authors:  Y Whitney Yin; Thomas A Steitz
Journal:  Science       Date:  2002-09-19       Impact factor: 47.728

7.  Ribosome interactions of aminoacyl-tRNA and elongation factor Tu in the codon-recognition complex.

Authors:  Holger Stark; Marina V Rodnina; Hans-Joachim Wieden; Friedrich Zemlin; Wolfgang Wintermeyer; Marin van Heel
Journal:  Nat Struct Biol       Date:  2002-11

8.  Genetic code ambiguity. Cell viability related to the severity of editing defects in mutant tRNA synthetases.

Authors:  Leslie A Nangle; Valerie De Crecy Lagard; Volker Doring; Paul Schimmel
Journal:  J Biol Chem       Date:  2002-09-18       Impact factor: 5.157

9.  Reverse transcriptase of Moloney murine leukemia virus binds to eukaryotic release factor 1 to modulate suppression of translational termination.

Authors:  Marianna Orlova; Andrew Yueh; Juliana Leung; Stephen P Goff
Journal:  Cell       Date:  2003-10-31       Impact factor: 41.582

10.  A cryo-electron microscopic study of ribosome-bound termination factor RF2.

Authors:  Urmila B S Rawat; Andrey V Zavialov; Jayati Sengupta; Mikel Valle; Robert A Grassucci; Jamie Linde; Bente Vestergaard; Måns Ehrenberg; Joachim Frank
Journal:  Nature       Date:  2003-01-02       Impact factor: 49.962

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  176 in total

Review 1.  The Biology of Forgetting-A Perspective.

Authors:  Ronald L Davis; Yi Zhong
Journal:  Neuron       Date:  2017-08-02       Impact factor: 17.173

Review 2.  Are there errors in glycogen biosynthesis and is laforin a repair enzyme?

Authors:  Peter J Roach
Journal:  FEBS Lett       Date:  2011-09-16       Impact factor: 4.124

3.  Insights into the molecular determinants of EF-G catalyzed translocation.

Authors:  Leyi Wang; Roger B Altman; Scott C Blanchard
Journal:  RNA       Date:  2011-10-27       Impact factor: 4.942

4.  A new understanding of the decoding principle on the ribosome.

Authors:  Natalia Demeshkina; Lasse Jenner; Eric Westhof; Marat Yusupov; Gulnara Yusupova
Journal:  Nature       Date:  2012-03-21       Impact factor: 49.962

5.  The α-amino group of the threonine substrate as the general base during tRNA aminoacylation: a new version of substrate-assisted catalysis predicted by hybrid DFT.

Authors:  Wenjuan Huang; Eric A C Bushnell; Christopher S Francklyn; James W Gauld
Journal:  J Phys Chem A       Date:  2011-09-26       Impact factor: 2.781

6.  Allosteric vs. spontaneous exit-site (E-site) tRNA dissociation early in protein synthesis.

Authors:  Chunlai Chen; Benjamin Stevens; Jaskiran Kaur; Zeev Smilansky; Barry S Cooperman; Yale E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

7.  Functional elucidation of a key contact between tRNA and the large ribosomal subunit rRNA during decoding.

Authors:  Rodrigo F Ortiz-Meoz; Rachel Green
Journal:  RNA       Date:  2010-08-25       Impact factor: 4.942

8.  Kinetic basis for global loss of fidelity arising from mismatches in the P-site codon:anticodon helix.

Authors:  Hani S Zaher; Rachel Green
Journal:  RNA       Date:  2010-08-19       Impact factor: 4.942

9.  Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion.

Authors:  Patrick O'Donoghue; Laure Prat; Ilka U Heinemann; Jiqiang Ling; Keturah Odoi; Wenshe R Liu; Dieter Söll
Journal:  FEBS Lett       Date:  2012-10-01       Impact factor: 4.124

Review 10.  Repurposing ribosomes for synthetic biology.

Authors:  Yi Liu; Do Soon Kim; Michael C Jewett
Journal:  Curr Opin Chem Biol       Date:  2017-09-01       Impact factor: 8.822

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