Literature DB >> 15929000

Cross-correlated spin relaxation effects in methyl 1H CPMG-based relaxation dispersion experiments: complications and a simple solution.

Dmitry M Korzhnev1, Anthony K Mittermaier, Lewis E Kay.   

Abstract

Artifacts associated with the measurement of methyl (1)H single quantum CPMG-based relaxation dispersion profiles are described. These artifacts arise due to the combination of cross-correlated spin relaxation effects involving intra-methyl (1)H-(1)H dipolar interactions and imperfections in (1)H refocusing pulses that are applied during CPMG intervals that quantify the effects of chemical exchange on measured transverse relaxation rates. As a result substantial errors in extracted exchange parameters can be obtained. A simple 'work-around' is presented where the (1)H chemical shift difference between the exchanging states is extracted from a combination of (13)C single quantum and (13)C-(1)H multiple quantum dispersion profiles. The approach is demonstrated with an application to a folding/unfolding reaction involving a G48M mutant Fyn SH3 domain.

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Year:  2005        PMID: 15929000     DOI: 10.1007/s10858-005-2468-7

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  16 in total

1.  Slow dynamics in folded and unfolded states of an SH3 domain.

Authors:  M Tollinger; N R Skrynnikov; F A Mulder; J D Forman-Kay; L E Kay
Journal:  J Am Chem Soc       Date:  2001-11-21       Impact factor: 15.419

Review 2.  Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules.

Authors:  A G Palmer; C D Kroenke; J P Loria
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

3.  Evidence for slow motion in proteins by multiple refocusing of heteronuclear nitrogen/proton multiple quantum coherences in NMR.

Authors:  Jens Dittmer; Geoffrey Bodenhausen
Journal:  J Am Chem Soc       Date:  2004-02-11       Impact factor: 15.419

4.  Multiple-quantum relaxation dispersion NMR spectroscopy probing millisecond time-scale dynamics in proteins: theory and application.

Authors:  Dmitry M Korzhnev; Karin Kloiber; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2004-06-16       Impact factor: 15.419

5.  Low-populated folding intermediates of Fyn SH3 characterized by relaxation dispersion NMR.

Authors:  Dmitry M Korzhnev; Xavier Salvatella; Michele Vendruscolo; Ariel A Di Nardo; Alan R Davidson; Christopher M Dobson; Lewis E Kay
Journal:  Nature       Date:  2004-07-29       Impact factor: 49.962

6.  Deuterium spin probes of side-chain dynamics in proteins. 2. Spectral density mapping and identification of nanosecond time-scale side-chain motions.

Authors:  Nikolai R Skrynnikov; Oscar Millet; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-06-05       Impact factor: 15.419

7.  Probing slow time scale dynamics at methyl-containing side chains in proteins by relaxation dispersion NMR measurements: application to methionine residues in a cavity mutant of T4 lysozyme.

Authors:  N R Skrynnikov; F A Mulder; B Hon; F W Dahlquist; L E Kay
Journal:  J Am Chem Soc       Date:  2001-05-16       Impact factor: 15.419

8.  Cross-correlated relaxation enhanced 1H[bond]13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes.

Authors:  Vitali Tugarinov; Peter M Hwang; Jason E Ollerenshaw; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2003-08-27       Impact factor: 15.419

9.  1H, 13C and 15N random coil NMR chemical shifts of the common amino acids. I. Investigations of nearest-neighbor effects.

Authors:  D S Wishart; C G Bigam; A Holm; R S Hodges; B D Sykes
Journal:  J Biomol NMR       Date:  1995-01       Impact factor: 2.835

10.  Probing slow dynamics in high molecular weight proteins by methyl-TROSY NMR spectroscopy: application to a 723-residue enzyme.

Authors:  Dmitry M Korzhnev; Karin Kloiber; Voula Kanelis; Vitali Tugarinov; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

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  6 in total

1.  Probing slowly exchanging protein systems via ¹³Cα-CEST: monitoring folding of the Im7 protein.

Authors:  Alexandar L Hansen; Guillaume Bouvignies; Lewis E Kay
Journal:  J Biomol NMR       Date:  2013-02-06       Impact factor: 2.835

2.  Quantitative measurement of exchange dynamics in proteins via (13)C relaxation dispersion of (13)CHD2-labeled samples.

Authors:  Enrico Rennella; Anne K Schuetz; Lewis E Kay
Journal:  J Biomol NMR       Date:  2016-06-01       Impact factor: 2.835

3.  A methyl 1H double quantum CPMG experiment to study protein conformational exchange.

Authors:  Anusha B Gopalan; Tairan Yuwen; Lewis E Kay; Pramodh Vallurupalli
Journal:  J Biomol NMR       Date:  2018-10-01       Impact factor: 2.835

4.  Probing microsecond time scale dynamics in proteins by methyl (1)H Carr-Purcell-Meiboom-Gill relaxation dispersion NMR measurements. Application to activation of the signaling protein NtrC(r).

Authors:  Renee Otten; Janice Villali; Dorothee Kern; Frans A A Mulder
Journal:  J Am Chem Soc       Date:  2010-11-08       Impact factor: 15.419

5.  Lysine methylation strategies for characterizing protein conformations by NMR.

Authors:  Sacha Thierry Larda; Michael P Bokoch; Ferenc Evanics; R Scott Prosser
Journal:  J Biomol NMR       Date:  2012-09-08       Impact factor: 2.835

Review 6.  Opportunities and Challenges of Backbone, Sidechain, and RDC Experiments to Study Membrane Protein Dynamics in a Detergent-Free Lipid Environment Using Solution State NMR.

Authors:  Stefan Bibow
Journal:  Front Mol Biosci       Date:  2019-10-25
  6 in total

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