Literature DB >> 15186169

Multiple-quantum relaxation dispersion NMR spectroscopy probing millisecond time-scale dynamics in proteins: theory and application.

Dmitry M Korzhnev1, Karin Kloiber, Lewis E Kay.   

Abstract

New relaxation dispersion experiments are presented that probe millisecond time-scale dynamical processes in proteins. The experiments measure the relaxation of (1)H-(15)N multiple-quantum coherence as a function of the rate of application of either (1)H or (15)N refocusing pulses during a constant time relaxation interval. In contrast to the dispersion profiles generated from more conventional (15)N((1)H) single-quantum relaxation experiments that depend on changes in (15)N((1)H) chemical shifts between exchanging states, (1)H-(15)N multiple-quantum dispersions are sensitive to changes in the chemical environments of both (1)H and (15)N spins. The resulting multiple-quantum relaxation dispersion profiles can, therefore, be quite different from those generated by single-quantum experiments, so that an analysis of both single- and multiple-quantum profiles together provides a powerful approach for obtaining robust measures of exchange parameters. This is particularly the case in applications to protonated proteins where other methods for studying exchange involving amide proton spins are negatively influenced by contributions from neighboring protons. The methodology is demonstrated on protonated and perdeuterated samples of a G48M mutant of the Fyn SH3 domain that exchanges between folded and unfolded states in solution.

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Year:  2004        PMID: 15186169     DOI: 10.1021/ja049968b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  45 in total

1.  GUARDD: user-friendly MATLAB software for rigorous analysis of CPMG RD NMR data.

Authors:  Ian R Kleckner; Mark P Foster
Journal:  J Biomol NMR       Date:  2011-12-11       Impact factor: 2.835

Review 2.  Solution NMR Spectroscopy for the Study of Enzyme Allostery.

Authors:  George P Lisi; J Patrick Loria
Journal:  Chem Rev       Date:  2016-01-06       Impact factor: 60.622

3.  Cross-correlated spin relaxation effects in methyl 1H CPMG-based relaxation dispersion experiments: complications and a simple solution.

Authors:  Dmitry M Korzhnev; Anthony K Mittermaier; Lewis E Kay
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

4.  Accuracy of optimized chemical-exchange parameters derived by fitting CPMG R2 dispersion profiles when R2(0a) not = R2(0b).

Authors:  Rieko Ishima; Dennis A Torchia
Journal:  J Biomol NMR       Date:  2006-04       Impact factor: 2.835

Review 5.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

6.  Allosteric Transmission along a Loosely Structured Backbone Allows a Cardiac Troponin C Mutant to Function with Only One Ca2+ Ion.

Authors:  Mayra de A Marques; Jose Renato Pinto; Adolfo H Moraes; Anwar Iqbal; Mariana T Q de Magalhães; Jamila Monteiro; Murilo M Pedrote; Martha M Sorenson; Jerson L Silva; Guilherme A P de Oliveira
Journal:  J Biol Chem       Date:  2017-01-03       Impact factor: 5.157

7.  Chemical exchange effects during refocusing pulses in constant-time CPMG relaxation dispersion experiments.

Authors:  Wazo Myint; Rieko Ishima
Journal:  J Biomol NMR       Date:  2009-07-19       Impact factor: 2.835

8.  Measurement of protein unfolding/refolding kinetics and structural characterization of hidden intermediates by NMR relaxation dispersion.

Authors:  Derrick W Meinhold; Peter E Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-11       Impact factor: 11.205

Review 9.  Using NMR spectroscopy to elucidate the role of molecular motions in enzyme function.

Authors:  George P Lisi; J Patrick Loria
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-12-07       Impact factor: 9.795

10.  Probing microsecond time scale dynamics in proteins by methyl (1)H Carr-Purcell-Meiboom-Gill relaxation dispersion NMR measurements. Application to activation of the signaling protein NtrC(r).

Authors:  Renee Otten; Janice Villali; Dorothee Kern; Frans A A Mulder
Journal:  J Am Chem Soc       Date:  2010-11-08       Impact factor: 15.419

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