Literature DB >> 14759169

Evidence for slow motion in proteins by multiple refocusing of heteronuclear nitrogen/proton multiple quantum coherences in NMR.

Jens Dittmer1, Geoffrey Bodenhausen.   

Abstract

A novel NMR method characterizes slow motions in proteins by multiple refocusing of double- and zero-quantum coherences of amide protons and nitrogen-15 nuclei. If both nuclei experience changes in their isotropic chemical shifts because of internal motions on slow time scales (mus - ms), this leads to a difference in the relaxation rates of double- and zero-quantum coherences. This is due to CSM/CSM (chemical shift modulation) cross-correlation effects that are related to the well-known chemical exchange contribution Rex to the decay rate R2 = 1/T2 of nitrogen-15 nuclei. The CSM/CSM contributions can be distinguished from other mechanisms through their dependence on the repetition rate of a Carr-Purcell-Meiboom-Gill (CPMG) multiple refocusing sequence. In ubiquitin, motional processes can be identified that could hitherto not be observed by conventional CPMG nitrogen-15 NMR.

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Year:  2004        PMID: 14759169     DOI: 10.1021/ja0386243

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  22 in total

Review 1.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

Review 2.  Using protein motion to read, write, and erase ubiquitin signals.

Authors:  Aaron H Phillips; Jacob E Corn
Journal:  J Biol Chem       Date:  2015-09-09       Impact factor: 5.157

3.  Cross-correlated spin relaxation effects in methyl 1H CPMG-based relaxation dispersion experiments: complications and a simple solution.

Authors:  Dmitry M Korzhnev; Anthony K Mittermaier; Lewis E Kay
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

4.  Effects of protein-pheromone complexation on correlated chemical shift modulations.

Authors:  Chiara Perazzolo; Julien Wist; Karine Loth; Luisa Poggi; Steve Homans; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

5.  A thorough dynamic interpretation of residual dipolar couplings in ubiquitin.

Authors:  Nils A Lakomek; Teresa Carlomagno; Stefan Becker; Christian Griesinger; Jens Meiler
Journal:  J Biomol NMR       Date:  2006-02       Impact factor: 2.835

6.  Pressure effects on the ensemble dynamics of ubiquitin inspected with molecular dynamics simulations and isotropic reorientational eigenmode dynamics.

Authors:  Nikolaos G Sgourakis; Ryan Day; Scott A McCallum; Angel E Garcia
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

7.  Self-consistent residual dipolar coupling based model-free analysis for the robust determination of nanosecond to microsecond protein dynamics.

Authors:  Nils-Alexander Lakomek; Korvin F A Walter; Christophe Farès; Oliver F Lange; Bert L de Groot; Helmut Grubmüller; Rafael Brüschweiler; Axel Munk; Stefan Becker; Jens Meiler; Christian Griesinger
Journal:  J Biomol NMR       Date:  2008-06-04       Impact factor: 2.835

Review 8.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

9.  Using relaxation dispersion NMR spectroscopy to determine structures of excited, invisible protein states.

Authors:  D Flemming Hansen; Pramodh Vallurupalli; Lewis E Kay
Journal:  J Biomol NMR       Date:  2008-06-24       Impact factor: 2.835

10.  Conformational dynamics and structural plasticity play critical roles in the ubiquitin recognition of a UIM domain.

Authors:  Nikolaos G Sgourakis; Mayank M Patel; Angel E Garcia; George I Makhatadze; Scott A McCallum
Journal:  J Mol Biol       Date:  2010-01-04       Impact factor: 5.469

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