Literature DB >> 23386228

Probing slowly exchanging protein systems via ¹³Cα-CEST: monitoring folding of the Im7 protein.

Alexandar L Hansen1, Guillaume Bouvignies, Lewis E Kay.   

Abstract

A¹³C(α) chemical exchange saturation transfer based experiment is presented for the study of protein systems undergoing slow interconversion between an 'observable' ground state and one or more 'invisible' excited states. Here a labeling strategy whereby [2-(13)C]-glucose is the sole carbon source is exploited, producing proteins with ¹³C at the C(α) position, while the majority of residues remain unlabeled at CO or C(β). The new experiment is demonstrated with an application to the folding reaction of the Im7 protein that involves an on-pathway excited state. The obtained excited state (13)C(α) chemical shifts are cross validated by comparison to values extracted from analysis of CPMG relaxation dispersion profiles, establishing the utility of the methodology.

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Year:  2013        PMID: 23386228     DOI: 10.1007/s10858-013-9711-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  57 in total

1.  A 2D ¹³C-CEST experiment for studying slowly exchanging protein systems using methyl probes: an application to protein folding.

Authors:  Guillaume Bouvignies; Lewis E Kay
Journal:  J Biomol NMR       Date:  2012-06-12       Impact factor: 2.835

2.  Using NMR chemical shifts as structural restraints in molecular dynamics simulations of proteins.

Authors:  Paul Robustelli; Kai Kohlhoff; Andrea Cavalli; Michele Vendruscolo
Journal:  Structure       Date:  2010-08-11       Impact factor: 5.006

3.  Protein structure determination from NMR chemical shifts.

Authors:  Andrea Cavalli; Xavier Salvatella; Christopher M Dobson; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

4.  Measurement of signs of chemical shift differences between ground and excited protein states: a comparison between H(S/M)QC and R1rho methods.

Authors:  Renate Auer; D Flemming Hansen; Philipp Neudecker; Dmitry M Korzhnev; D Ranjith Muhandiram; Robert Konrat; Lewis E Kay
Journal:  J Biomol NMR       Date:  2009-12-22       Impact factor: 2.835

5.  Protein folding intermediates: native-state hydrogen exchange.

Authors:  Y Bai; T R Sosnick; L Mayne; S W Englander
Journal:  Science       Date:  1995-07-14       Impact factor: 47.728

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Probing chemical shifts of invisible states of proteins with relaxation dispersion NMR spectroscopy: how well can we do?

Authors:  D Flemming Hansen; Pramodh Vallurupalli; Patrik Lundström; Philipp Neudecker; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2008-02-01       Impact factor: 15.419

8.  Demonstration of a low-energy on-pathway intermediate in a fast-folding protein by kinetics, protein engineering, and simulation.

Authors:  Per Jemth; Stefano Gianni; Ryan Day; Bin Li; Christopher M Johnson; Valerie Daggett; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-19       Impact factor: 11.205

9.  Carbonyl carbon transverse relaxation dispersion measurements and ms-micros timescale motion in a protein hydrogen bond network.

Authors:  Rieko Ishima; James Baber; John M Louis; Dennis A Torchia
Journal:  J Biomol NMR       Date:  2004-06       Impact factor: 2.835

10.  CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data.

Authors:  David S Wishart; David Arndt; Mark Berjanskii; Peter Tang; Jianjun Zhou; Guohui Lin
Journal:  Nucleic Acids Res       Date:  2008-05-30       Impact factor: 16.971

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  10 in total

Review 1.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

2.  Probing the excited-state chemical shifts and exchange parameters by nitrogen-decoupled amide proton chemical exchange saturation transfer (HNdec-CEST).

Authors:  Qinglin Wu; Benjamin A Fenton; Jessica L Wojtaszek; Pei Zhou
Journal:  Chem Commun (Camb)       Date:  2017-07-27       Impact factor: 6.222

3.  13Cα CEST experiment on uniformly 13C-labeled proteins.

Authors:  Yang Zhou; Daiwen Yang
Journal:  J Biomol NMR       Date:  2014-12-04       Impact factor: 2.835

4.  Characterizing methyl-bearing side chain contacts and dynamics mediating amyloid β protofibril interactions using ¹³C(methyl)-DEST and lifetime line broadening.

Authors:  Nicolas L Fawzi; David S Libich; Jinfa Ying; Vitali Tugarinov; G Marius Clore
Journal:  Angew Chem Int Ed Engl       Date:  2014-08-11       Impact factor: 15.336

Review 5.  NMR methods for exploring 'dark' states in ligand binding and protein-protein interactions.

Authors:  Vitali Tugarinov; Alberto Ceccon; G Marius Clore
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2021-11-02       Impact factor: 9.795

6.  Characterizing slow chemical exchange in nucleic acids by carbon CEST and low spin-lock field R(1ρ) NMR spectroscopy.

Authors:  Bo Zhao; Alexandar L Hansen; Qi Zhang
Journal:  J Am Chem Soc       Date:  2013-12-18       Impact factor: 15.419

7.  Measurement of histidine pKa values and tautomer populations in invisible protein states.

Authors:  Alexandar L Hansen; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-14       Impact factor: 11.205

8.  Rapid Determination of Fast Protein Dynamics from NMR Chemical Exchange Saturation Transfer Data.

Authors:  Yina Gu; Alexandar L Hansen; Yu Peng; Rafael Brüschweiler
Journal:  Angew Chem Int Ed Engl       Date:  2016-01-28       Impact factor: 15.336

9.  Equilibrium folding dynamics of meACP in water, heavy water, and low concentration of urea.

Authors:  Yang Zhou; Daiwen Yang
Journal:  Sci Rep       Date:  2017-11-23       Impact factor: 4.379

10.  Chemo-enzymatic synthesis of site-specific isotopically labeled nucleotides for use in NMR resonance assignment, dynamics and structural characterizations.

Authors:  Andrew P Longhini; Regan M LeBlanc; Owen Becette; Carolina Salguero; Christoph H Wunderlich; Bruce A Johnson; Victoria M D'Souza; Christoph Kreutz; T Kwaku Dayie
Journal:  Nucleic Acids Res       Date:  2015-12-10       Impact factor: 16.971

  10 in total

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