Literature DB >> 15909202

Rapid detection of herpes simplex virus DNA in cerebrospinal fluid: comparison between loop-mediated isothermal amplification and real-time PCR.

Hiroshi Kimura1, Masaru Ihira, Yoshihiro Enomoto, Jun-ichi Kawada, Yoshinori Ito, Tsuneo Morishima, Tetsushi Yoshikawa, Yoshizo Asano.   

Abstract

Loop-mediated isothermal amplification (LAMP) is a novel nucleic acid amplification method that amplifies DNA with high specificity, efficiency, and speed under isothermal conditions. To evaluate the usefulness of LAMP for diagnosing central nervous system infection with herpes simplex virus (HSV), we compared the LAMP method with real-time PCR, using samples that were previously tested by nested PCR. We examined 69 cerebrospinal fluid (CSF) samples from patients suspected of having HSV infection of the central nervous system. The results of the real-time PCR analysis and nested PCR assay were in complete accord. When nested PCR was regarded as standard, the sensitivity of LAMP was 81%, the specificity was 100%, the positive predictive value was 100%, and the negative predictive value was 90%. Although further improvement is necessary for the wide spread use, the LAMP method might be applicable to diagnosis of HSV infection of the central nervous system.

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Year:  2005        PMID: 15909202     DOI: 10.1007/s00430-005-0242-9

Source DB:  PubMed          Journal:  Med Microbiol Immunol        ISSN: 0300-8584            Impact factor:   3.402


  23 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus.

Authors:  Manmohan Parida; Guillermo Posadas; Shingo Inoue; Futoshi Hasebe; Kouichi Morita
Journal:  J Clin Microbiol       Date:  2004-01       Impact factor: 5.948

3.  Accelerated reaction by loop-mediated isothermal amplification using loop primers.

Authors:  K Nagamine; T Hase; T Notomi
Journal:  Mol Cell Probes       Date:  2002-06       Impact factor: 2.365

4.  Real-time turbidimetry of LAMP reaction for quantifying template DNA.

Authors:  Yasuyoshi Mori; Masataka Kitao; Norihiro Tomita; Tsugunori Notomi
Journal:  J Biochem Biophys Methods       Date:  2004-05-31

5.  Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples.

Authors:  Tomotada Iwamoto; Toshiaki Sonobe; Kozaburo Hayashi
Journal:  J Clin Microbiol       Date:  2003-06       Impact factor: 5.948

6.  Rapid diagnosis of herpes simplex virus infection by a loop-mediated isothermal amplification method.

Authors:  Yoshihiko Enomoto; Tetsushi Yoshikawa; Masaru Ihira; Shiho Akimoto; Fumi Miyake; Chie Usui; Sadao Suga; Kayoko Suzuki; Takashi Kawana; Yukihiro Nishiyama; Yoshizo Asano
Journal:  J Clin Microbiol       Date:  2005-02       Impact factor: 5.948

7.  Development and evaluation of a novel loop-mediated isothermal amplification method for rapid detection of severe acute respiratory syndrome coronavirus.

Authors:  Thi Cam Thai Hong; Quynh Le Mai; Duc Vuong Cuong; Manmohan Parida; Harumi Minekawa; Tsugunori Notomi; Futoshi Hasebe; Kouichi Morita
Journal:  J Clin Microbiol       Date:  2004-05       Impact factor: 5.948

8.  Diagnosis of herpesvirus infections of the central nervous system.

Authors:  Stephan W Aberle; Elisabeth Puchhammer-Stöckl
Journal:  J Clin Virol       Date:  2002-07       Impact factor: 3.168

9.  Quantitative analysis of Epstein-Barr virus load by using a real-time PCR assay.

Authors:  H Kimura; M Morita; Y Yabuta; K Kuzushima; K Kato; S Kojima; T Matsuyama; T Morishima
Journal:  J Clin Microbiol       Date:  1999-01       Impact factor: 5.948

10.  Relapse of neonatal herpes simplex virus infection.

Authors:  H Kimura; M Futamura; Y Ito; Y Ando; S Hara; H Sobajima; Y Nishiyama; T Morishima
Journal:  Arch Dis Child Fetal Neonatal Ed       Date:  2003-11       Impact factor: 5.747

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  2 in total

1.  Rapid and direct detection of herpes simplex virus in cerebrospinal fluid by use of a commercial real-time PCR assay.

Authors:  Matthew J Binnicker; Mark J Espy; Cole L Irish
Journal:  J Clin Microbiol       Date:  2014-10-01       Impact factor: 5.948

2.  Reverse transcription loop-mediated isothermal amplification to rapidly detect Rice ragged stunt virus.

Authors:  Dingwang Lai; Yuliang Zhang; Qixing Huang; Guohua Yin; Kayla K Pennerman; Zhixin Liu; Anping Guo
Journal:  Saudi J Biol Sci       Date:  2016-03-02       Impact factor: 4.219

  2 in total

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