Literature DB >> 15163526

Real-time turbidimetry of LAMP reaction for quantifying template DNA.

Yasuyoshi Mori1, Masataka Kitao, Norihiro Tomita, Tsugunori Notomi.   

Abstract

Loop-mediated isothermal amplification (LAMP) is a nucleic acid amplification method that allows the synthesis of large amounts of DNA in a short period of time with high specificity. As the LAMP reaction progresses, the reaction by-product pyrophosphate ions bind to magnesium ions and form a white precipitate of magnesium pyrophosphate. We designed an apparatus capable of measuring the turbidity of multiple samples simultaneously while maintaining constant temperature to conduct real-time measurements of the changes in the turbidity of LAMP reactions. The time (Tt) required for the turbidity of the LAMP reaction solution to exceed a given value was dependent on the quantity of the initial template DNA. That is, a graph with the plot of Tt versus the log of the amount of initial template DNA was linear from 2 x 10(3) copies (0.01 pg/tube) to 2 x 10(9) copies (100 ng/tube) of template DNA. These results indicate that real-time turbidity measurements of the LAMP reaction permit the quantitative analysis of minute amounts of nucleic acids present in a sample, with a high precision over a wide range, using a simple apparatus reported in this study.

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Year:  2004        PMID: 15163526     DOI: 10.1016/j.jbbm.2003.12.005

Source DB:  PubMed          Journal:  J Biochem Biophys Methods        ISSN: 0165-022X


  135 in total

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2.  Loop-mediated isothermal amplification assay for detection of Haemophilus influenzae type b in cerebrospinal fluid.

Authors:  Dong Wook Kim; Paul Evan Kilgore; Eun Jin Kim; Soon Ae Kim; Dang Duc Anh; Mitsuko Seki
Journal:  J Clin Microbiol       Date:  2011-08-10       Impact factor: 5.948

3.  Loop-Mediated Isothermal Amplification (LAMP) for Rapid Detection and Quantification of Dehalococcoides Biomarker Genes in Commercial Reductive Dechlorinating Cultures KB-1 and SDC-9.

Authors:  Yogendra H Kanitkar; Robert D Stedtfeld; Robert J Steffan; Syed A Hashsham; Alison M Cupples
Journal:  Appl Environ Microbiol       Date:  2016-01-08       Impact factor: 4.792

4.  Lack of correlation between reaction speed and analytical sensitivity in isothermal amplification reveals the value of digital methods for optimization: validation using digital real-time RT-LAMP.

Authors:  Eugenia M Khorosheva; Mikhail A Karymov; David A Selck; Rustem F Ismagilov
Journal:  Nucleic Acids Res       Date:  2015-09-10       Impact factor: 16.971

5.  A novel application of real-time RT-LAMP for body fluid identification: using HBB detection as the model.

Authors:  Chih-Wen Su; Chiao-Yun Li; James Chun-I Lee; Dar-Der Ji; Shu-Ying Li; Barbara Daniel; Denise Syndercombe-Court; Adrian Linacre; Hsing-Mei Hsieh
Journal:  Forensic Sci Med Pathol       Date:  2015-04-16       Impact factor: 2.007

6.  Rapid detection of herpes simplex virus DNA in cerebrospinal fluid: comparison between loop-mediated isothermal amplification and real-time PCR.

Authors:  Hiroshi Kimura; Masaru Ihira; Yoshihiro Enomoto; Jun-ichi Kawada; Yoshinori Ito; Tsuneo Morishima; Tetsushi Yoshikawa; Yoshizo Asano
Journal:  Med Microbiol Immunol       Date:  2005-05-21       Impact factor: 3.402

7.  Evaluation of real-time reverse transcriptase PCR and real-time loop-mediated amplification assays for severe acute respiratory syndrome coronavirus detection.

Authors:  Leo L M Poon; Bonnie W Y Wong; Kwok H Chan; Stella S F Ng; Kwok Y Yuen; Yi Guan; J S Malik Peiris
Journal:  J Clin Microbiol       Date:  2005-07       Impact factor: 5.948

8.  A novel, highly sensitive and rapid allele-specific loop-mediated amplification assay for the detection of the JAK2V617F mutation in chronic myeloproliferative neoplasms.

Authors:  Giulia Minnucci; Giulia Amicarelli; Silvia Salmoiraghi; Orietta Spinelli; Marie Lorena Guinea Montalvo; Ursula Giussani; Daniel Adlerstein; Alessandro Rambaldi
Journal:  Haematologica       Date:  2012-02-07       Impact factor: 9.941

9.  Novel loop-mediated isothermal amplification method for detection of the JP2 clone of Aggregatibacter actinomycetemcomitans in subgingival plaque.

Authors:  Mitsuko Seki; Knud Poulsen; Dorte Haubek; Mogens Kilian
Journal:  J Clin Microbiol       Date:  2007-12-26       Impact factor: 5.948

10.  Isolation and drug susceptibility of Candida parapsilosis sensu lato and other species of C. parapsilosis complex from patients with blood stream infections and proposal of a novel LAMP identification method for the species.

Authors:  Plinio Trabasso; Tetsuhiro Matsuzawa; Renata Fagnani; Yasunori Muraosa; Kenichiro Tominaga; Mariangela Ribeiro Resende; Katsuhiko Kamei; Yuzuru Mikami; Angelica Zaninelli Schreiber; Maria Luiza Moretti
Journal:  Mycopathologia       Date:  2014-12-07       Impact factor: 2.574

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