Literature DB >> 15808345

Techniques: application of systems biology to absorption, distribution, metabolism, excretion and toxicity.

Sean Ekins1, Yuri Nikolsky, Tatiana Nikolskaya.   

Abstract

It is widely recognized that either predicting or determining the absorption, distribution, metabolism, excretion and toxicity (ADME/Tox) properties of molecules helps to prevent the failure of some compounds before they reach the clinic. Consequently, there has been considerable research into developing better in silico, in vitro and in vivo methods and models. Toxicogenomics, proteomics, metabonomics and pharmacogenomics represent the latest experimental approaches that can be combined with high-throughput molecular screening of targets to provide a view of the complete biological system that is modulated by a compound. The functional interpretation and relevance of these complex multidimensional data to the phenotype observed in humans is the focus of current research in toxicology. Multiple content databases, data mining and predictive modeling algorithms, visualization tools, and high-throughput data-analysis solutions are being integrated to form systems-ADME/Tox. In this review, we focus on the most recent advances and applications in this area.

Entities:  

Mesh:

Year:  2005        PMID: 15808345     DOI: 10.1016/j.tips.2005.02.006

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   14.819


  25 in total

1.  Predictive modeling of chemical hazard by integrating numerical descriptors of chemical structures and short-term toxicity assay data.

Authors:  Ivan Rusyn; Alexander Sedykh; Yen Low; Kathryn Z Guyton; Alexander Tropsha
Journal:  Toxicol Sci       Date:  2012-03-02       Impact factor: 4.849

Review 2.  In-depth understanding of molecular mechanisms of aldehyde toxicity to engineer robust Saccharomyces cerevisiae.

Authors:  Lahiru N Jayakody; Yong-Su Jin
Journal:  Appl Microbiol Biotechnol       Date:  2021-03-20       Impact factor: 4.813

Review 3.  Toxicogenomics in drug discovery and drug development: potential applications and future challenges.

Authors:  Tin Oo Khor; Sherif Ibrahim; Ah-Ng Tony Kong
Journal:  Pharm Res       Date:  2006-08       Impact factor: 4.200

Review 4.  In silico pharmacology for drug discovery: methods for virtual ligand screening and profiling.

Authors:  S Ekins; J Mestres; B Testa
Journal:  Br J Pharmacol       Date:  2007-06-04       Impact factor: 8.739

Review 5.  Application of metabonomic analytical techniques in the modernization and toxicology research of traditional Chinese medicine.

Authors:  Yong-Min Lao; Jian-Guo Jiang; Lu Yan
Journal:  Br J Pharmacol       Date:  2009-06-05       Impact factor: 8.739

Review 6.  Systems biology for molecular life sciences and its impact in biomedicine.

Authors:  Miguel Ángel Medina
Journal:  Cell Mol Life Sci       Date:  2012-08-19       Impact factor: 9.261

7.  Toxicity testing in the 21st century: a vision and a strategy.

Authors:  Daniel Krewski; Daniel Acosta; Melvin Andersen; Henry Anderson; John C Bailar; Kim Boekelheide; Robert Brent; Gail Charnley; Vivian G Cheung; Sidney Green; Karl T Kelsey; Nancy I Kerkvliet; Abby A Li; Lawrence McCray; Otto Meyer; Reid D Patterson; William Pennie; Robert A Scala; Gina M Solomon; Martin Stephens; James Yager; Lauren Zeise
Journal:  J Toxicol Environ Health B Crit Rev       Date:  2010-02       Impact factor: 6.393

8.  Detailed potential of mean force studies on host-guest systems from the SAMPL6 challenge.

Authors:  Lin Frank Song; Nupur Bansal; Zheng Zheng; Kenneth M Merz
Journal:  J Comput Aided Mol Des       Date:  2018-08-24       Impact factor: 3.686

9.  Network analysis of human glaucomatous optic nerve head astrocytes.

Authors:  Tatiana Nikolskaya; Yuri Nikolsky; Tatiana Serebryiskaya; Svetlana Zvereva; Eugene Sviridov; Zoltan Dezso; Eugene Rahkmatulin; Richard J Brennan; Nick Yankovsky; Sanjoy K Bhattacharya; Olga Agapova; M Rosario Hernandez; Valery I Shestopalov
Journal:  BMC Med Genomics       Date:  2009-05-09       Impact factor: 3.063

Review 10.  The plasma proteome, adductome and idiosyncratic toxicity in toxicoproteomics research.

Authors:  B Alex Merrick
Journal:  Brief Funct Genomic Proteomic       Date:  2008-02-12
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