Literature DB >> 16858654

Toxicogenomics in drug discovery and drug development: potential applications and future challenges.

Tin Oo Khor1, Sherif Ibrahim, Ah-Ng Tony Kong.   

Abstract

Despite the massive investments made by pharmaceutical companies on drug research and development, the number of new drug approvals has remained stagnant in the past decades. It is well known that developing safe and effective new drugs is a long, difficult, and expensive process. While the cost of developing new drugs is increasing rapidly, withdrawals of drugs from the marketplace due to adverse drug reactions (ADR) and/or toxicity is increasing concurrently. The recent advent of high-throughput in silico (computer softwares) and in vitro (cell cultures) screenings have somewhat alleviated some, but not all, of these challenges by providing an efficient and effective way for developing safer and better drugs. This emerging technology, known as toxicogenomics, has great potential to facilitate the development of methodologies that could predict the long-term toxic effects of compounds using relatively short-term bioassays. This review is aimed at discussing the potential applications and future challenges of toxicogenomics in drug discovery and drug development.

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Year:  2006        PMID: 16858654     DOI: 10.1007/s11095-006-9003-8

Source DB:  PubMed          Journal:  Pharm Res        ISSN: 0724-8741            Impact factor:   4.200


  56 in total

Review 1.  ADMET in silico modelling: towards prediction paradise?

Authors:  Han van de Waterbeemd; Eric Gifford
Journal:  Nat Rev Drug Discov       Date:  2003-03       Impact factor: 84.694

Review 2.  Informatics and multivariate analysis of toxicogenomics data.

Authors:  A Hugh Salter; Kerstin C Nilsson
Journal:  Curr Opin Drug Discov Devel       Date:  2003-01

3.  Dexamethasone selectively inhibits WY14,643-induced cell proliferation and not peroxisome proliferation in mice.

Authors:  J W Lawrence; G K Wollenberg; J D Frank; J G DeLuca
Journal:  Toxicol Appl Pharmacol       Date:  2001-01-15       Impact factor: 4.219

4.  Expression of Fas system-related genes in the testis during development and after toxicant exposure.

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Journal:  Toxicol Lett       Date:  1998-12-28       Impact factor: 4.372

5.  The predictivity of the toxicity of pharmaceuticals in humans from animal data--an interim assessment.

Authors:  H Olson; G Betton; J Stritar; D Robinson
Journal:  Toxicol Lett       Date:  1998-12-28       Impact factor: 4.372

6.  Chronic toxicity tests of pyrilamine maleate and methapyrilene hydrochloride in F344 rats.

Authors:  W Lijinsky
Journal:  Food Chem Toxicol       Date:  1984-01       Impact factor: 6.023

7.  Liver tumors induced in rats by oral administration of the antihistaminic methapyrilene hydrochloride.

Authors:  W Lijinsky; M D Reuber; B N Blackwell
Journal:  Science       Date:  1980-08-15       Impact factor: 47.728

8.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

9.  Fibrates induce hepatic peroxisome and mitochondrial proliferation without overt evidence of cellular proliferation and oxidative stress in cynomolgus monkeys.

Authors:  Debie J Hoivik; Charles W Qualls; Rosanna C Mirabile; Neal F Cariello; Carie L Kimbrough; Heidi M Colton; Steven P Anderson; Michael J Santostefano; Ronda J Ott Morgan; Ray R Dahl; Alan R Brown; Zhiyang Zhao; Paul N Mudd; William B Oliver; H Roger Brown; Richard T Miller
Journal:  Carcinogenesis       Date:  2004-05-06       Impact factor: 4.944

10.  Downregulation of lactoferrin by PPARalpha ligands: role in perturbation of hepatocyte proliferation and apoptosis.

Authors:  Susan Hasmall; George Orphanides; Neil James; William Pennie; Kathryn Hedley; Anthony Soames; Ian Kimber; Ruth Roberts
Journal:  Toxicol Sci       Date:  2002-08       Impact factor: 4.849

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  6 in total

1.  Gene expression profiling and its practice in drug development.

Authors:  Murty V Chengalvala; Vargheese M Chennathukuzhi; Daniel S Johnston; Panayiotis E Stevis; Gregory S Kopf
Journal:  Curr Genomics       Date:  2007-06       Impact factor: 2.236

Review 2.  Systems biology and functional genomics approaches for the identification of cellular responses to drug toxicity.

Authors:  Alison Hege Harrill; Ivan Rusyn
Journal:  Expert Opin Drug Metab Toxicol       Date:  2008-11       Impact factor: 4.481

Review 3.  Recent advances in 2D and 3D in vitro systems using primary hepatocytes, alternative hepatocyte sources and non-parenchymal liver cells and their use in investigating mechanisms of hepatotoxicity, cell signaling and ADME.

Authors:  Patricio Godoy; Nicola J Hewitt; Ute Albrecht; Melvin E Andersen; Nariman Ansari; Sudin Bhattacharya; Johannes Georg Bode; Jennifer Bolleyn; Christoph Borner; Jan Böttger; Albert Braeuning; Robert A Budinsky; Britta Burkhardt; Neil R Cameron; Giovanni Camussi; Chong-Su Cho; Yun-Jaie Choi; J Craig Rowlands; Uta Dahmen; Georg Damm; Olaf Dirsch; María Teresa Donato; Jian Dong; Steven Dooley; Dirk Drasdo; Rowena Eakins; Karine Sá Ferreira; Valentina Fonsato; Joanna Fraczek; Rolf Gebhardt; Andrew Gibson; Matthias Glanemann; Chris E P Goldring; María José Gómez-Lechón; Geny M M Groothuis; Lena Gustavsson; Christelle Guyot; David Hallifax; Seddik Hammad; Adam Hayward; Dieter Häussinger; Claus Hellerbrand; Philip Hewitt; Stefan Hoehme; Hermann-Georg Holzhütter; J Brian Houston; Jens Hrach; Kiyomi Ito; Hartmut Jaeschke; Verena Keitel; Jens M Kelm; B Kevin Park; Claus Kordes; Gerd A Kullak-Ublick; Edward L LeCluyse; Peng Lu; Jennifer Luebke-Wheeler; Anna Lutz; Daniel J Maltman; Madlen Matz-Soja; Patrick McMullen; Irmgard Merfort; Simon Messner; Christoph Meyer; Jessica Mwinyi; Dean J Naisbitt; Andreas K Nussler; Peter Olinga; Francesco Pampaloni; Jingbo Pi; Linda Pluta; Stefan A Przyborski; Anup Ramachandran; Vera Rogiers; Cliff Rowe; Celine Schelcher; Kathrin Schmich; Michael Schwarz; Bijay Singh; Ernst H K Stelzer; Bruno Stieger; Regina Stöber; Yuichi Sugiyama; Ciro Tetta; Wolfgang E Thasler; Tamara Vanhaecke; Mathieu Vinken; Thomas S Weiss; Agata Widera; Courtney G Woods; Jinghai James Xu; Kathy M Yarborough; Jan G Hengstler
Journal:  Arch Toxicol       Date:  2013-08-23       Impact factor: 5.153

4.  Ensemble of rankers for efficient gene signature extraction in smoke exposure classification.

Authors:  Maurizio Giordano; Kumar Parijat Tripathi; Mario Rosario Guarracino
Journal:  BMC Bioinformatics       Date:  2018-03-08       Impact factor: 3.169

5.  A computational toxicogenomics approach identifies a list of highly hepatotoxic compounds from a large microarray database.

Authors:  Héctor A Rueda-Zárate; Iván Imaz-Rosshandler; Roberto A Cárdenas-Ovando; Juan E Castillo-Fernández; Julieta Noguez-Monroy; Claudia Rangel-Escareño
Journal:  PLoS One       Date:  2017-04-27       Impact factor: 3.240

6.  Toxic Dose prediction of Chemical Compounds to Biomarkers using an ANOVA based Gene Expression Analysis.

Authors:  Mohammad Nazmol Hasan; Zobaer Akond; Md Jahangir Alam; Anjuman Ara Begum; Moizur Rahman; Md Nurul Haque Mollah
Journal:  Bioinformation       Date:  2018-07-31
  6 in total

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