Literature DB >> 22903296

Systems biology for molecular life sciences and its impact in biomedicine.

Miguel Ángel Medina1.   

Abstract

Modern systems biology is already contributing to a radical transformation of molecular life sciences and biomedicine, and it is expected to have a real impact in the clinical setting in the next years. In this review, the emergence of systems biology is contextualized with a historic overview, and its present state is depicted. The present and expected future contribution of systems biology to the development of molecular medicine is underscored. Concerning the present situation, this review includes a reflection on the "inflation" of biological data and the urgent need for tools and procedures to make hidden information emerge. Descriptions of the impact of networks and models and the available resources and tools for applying them in systems biology approaches to molecular medicine are provided as well. The actual current impact of systems biology in molecular medicine is illustrated, reviewing two cases, namely, those of systems pharmacology and cancer systems biology. Finally, some of the expected contributions of systems biology to the immediate future of molecular medicine are commented.

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Year:  2012        PMID: 22903296     DOI: 10.1007/s00018-012-1109-z

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  133 in total

Review 1.  Network medicine in drug design: implications for neuroinflammation.

Authors:  Sourish Ghosh; Anirban Basu
Journal:  Drug Discov Today       Date:  2012-01-28       Impact factor: 7.851

2.  A cell-based model exhibiting branching and anastomosis during tumor-induced angiogenesis.

Authors:  Amy L Bauer; Trachette L Jackson; Yi Jiang
Journal:  Biophys J       Date:  2007-02-02       Impact factor: 4.033

3.  Integration of biological networks and gene expression data using Cytoscape.

Authors:  Melissa S Cline; Michael Smoot; Ethan Cerami; Allan Kuchinsky; Nerius Landys; Chris Workman; Rowan Christmas; Iliana Avila-Campilo; Michael Creech; Benjamin Gross; Kristina Hanspers; Ruth Isserlin; Ryan Kelley; Sarah Killcoyne; Samad Lotia; Steven Maere; John Morris; Keiichiro Ono; Vuk Pavlovic; Alexander R Pico; Aditya Vailaya; Peng-Liang Wang; Annette Adler; Bruce R Conklin; Leroy Hood; Martin Kuiper; Chris Sander; Ilya Schmulevich; Benno Schwikowski; Guy J Warner; Trey Ideker; Gary D Bader
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

4.  BioModels.net Web Services, a free and integrated toolkit for computational modelling software.

Authors:  Chen Li; Mélanie Courtot; Nicolas Le Novère; Camille Laibe
Journal:  Brief Bioinform       Date:  2009-11-25       Impact factor: 11.622

5.  A whole-cell computational model predicts phenotype from genotype.

Authors:  Jonathan R Karr; Jayodita C Sanghvi; Derek N Macklin; Miriam V Gutschow; Jared M Jacobs; Benjamin Bolival; Nacyra Assad-Garcia; John I Glass; Markus W Covert
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

6.  Systems biology of tumor dormancy: linking biology and mathematics on multiple scales to improve cancer therapy.

Authors:  Heiko Enderling; Philip Hahnfeldt; Lynn Hlatky; Nava Almog
Journal:  Cancer Res       Date:  2012-03-13       Impact factor: 12.701

7.  BioMet Toolbox: genome-wide analysis of metabolism.

Authors:  Marija Cvijovic; Roberto Olivares-Hernández; Rasmus Agren; Niklas Dahr; Wanwipa Vongsangnak; Intawat Nookaew; Kiran Raosaheb Patil; Jens Nielsen
Journal:  Nucleic Acids Res       Date:  2010-05-18       Impact factor: 16.971

8.  Sequential application of anticancer drugs enhances cell death by rewiring apoptotic signaling networks.

Authors:  Michael J Lee; Albert S Ye; Alexandra K Gardino; Anne Margriet Heijink; Peter K Sorger; Gavin MacBeath; Michael B Yaffe
Journal:  Cell       Date:  2012-05-11       Impact factor: 41.582

9.  The Edinburgh human metabolic network reconstruction and its functional analysis.

Authors:  Hongwu Ma; Anatoly Sorokin; Alexander Mazein; Alex Selkov; Evgeni Selkov; Oleg Demin; Igor Goryanin
Journal:  Mol Syst Biol       Date:  2007-09-18       Impact factor: 11.429

Review 10.  Challenges of antiangiogenic cancer therapy: trials and errors, and renewed hope.

Authors:  Miguel Angel Medina; Ramón Muñoz-Chápuli; Ana R Quesada
Journal:  J Cell Mol Med       Date:  2007 May-Jun       Impact factor: 5.310

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  4 in total

Review 1.  Polyamines in mammalian pathophysiology.

Authors:  Francisca Sánchez-Jiménez; Miguel Ángel Medina; Lorena Villalobos-Rueda; José Luis Urdiales
Journal:  Cell Mol Life Sci       Date:  2019-06-21       Impact factor: 9.261

2.  Damnacanthal, a noni anthraquinone, inhibits c-Met and is a potent antitumor compound against Hep G2 human hepatocellular carcinoma cells.

Authors:  Javier A García-Vilas; Ana R Quesada; Miguel A Medina
Journal:  Sci Rep       Date:  2015-01-26       Impact factor: 4.379

Review 3.  Histamine, Metabolic Remodelling and Angiogenesis: A Systems Level Approach.

Authors:  Aurelio A Moya-García; Almudena Pino-Ángeles; Francisca Sánchez-Jiménez; José Luis Urdiales; Miguel Ángel Medina
Journal:  Biomolecules       Date:  2021-03-11

Review 4.  Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery.

Authors:  Douglas B Kell; Royston Goodacre
Journal:  Drug Discov Today       Date:  2013-07-26       Impact factor: 7.851

  4 in total

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