Literature DB >> 14517231

High-resolution structure of the E.coli RecQ helicase catalytic core.

Douglas A Bernstein1, Morgan C Zittel, James L Keck.   

Abstract

RecQ family helicases catalyze critical genome maintenance reactions in bacterial and eukaryotic cells, playing key roles in several DNA metabolic processes. Mutations in recQ genes are linked to genome instability and human disease. To define the physical basis of RecQ enzyme function, we have determined a 1.8 A resolution crystal structure of the catalytic core of Escherichia coli RecQ in its unbound form and a 2.5 A resolution structure of the core bound to the ATP analog ATPgammaS. The RecQ core comprises four conserved subdomains; two of these combine to form its helicase region, while the others form unexpected Zn(2+)-binding and winged-helix motifs. The structures reveal the molecular basis of missense mutations that cause Bloom's syndrome, a human RecQ-associated disease. Finally, based on findings from the structures, we propose a mechanism for RecQ activity that could explain its functional coordination with topoisomerase III.

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Year:  2003        PMID: 14517231      PMCID: PMC204483          DOI: 10.1093/emboj/cdg500

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  69 in total

Review 1.  DNA topoisomerases: structure, function, and mechanism.

Authors:  J J Champoux
Journal:  Annu Rev Biochem       Date:  2001       Impact factor: 23.643

2.  Oligomeric ring structure of the Bloom's syndrome helicase.

Authors:  J K Karow; R H Newman; P S Freemont; I D Hickson
Journal:  Curr Biol       Date:  1999-06-03       Impact factor: 10.834

3.  Biochemical characterization of the DNA helicase activity of the escherichia coli RecQ helicase.

Authors:  F G Harmon; S C Kowalczykowski
Journal:  J Biol Chem       Date:  2001-01-05       Impact factor: 5.157

4.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

5.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

6.  Reassessment of Ellman's reagent.

Authors:  P W Riddles; R L Blakeley; B Zerner
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

7.  The N-terminal region of Sgs1, which interacts with Top3, is required for complementation of MMS sensitivity and suppression of hyper-recombination in sgs1 disruptants.

Authors:  A Ui; Y Satoh; F Onoda; A Miyajima; M Seki; T Enomoto
Journal:  Mol Genet Genomics       Date:  2001-07       Impact factor: 3.291

8.  Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding.

Authors:  J L Kim; K A Morgenstern; J P Griffith; M D Dwyer; J A Thomson; M A Murcko; C Lin; P R Caron
Journal:  Structure       Date:  1998-01-15       Impact factor: 5.006

9.  Mercurial-promoted Zn2+ release from Escherichia coli aspartate transcarbamoylase.

Authors:  J B Hunt; S H Neece; H K Schachman; A Ginsburg
Journal:  J Biol Chem       Date:  1984-12-10       Impact factor: 5.157

10.  Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin.

Authors:  G D Van Duyne; R F Standaert; P A Karplus; S L Schreiber; J Clardy
Journal:  J Mol Biol       Date:  1993-01-05       Impact factor: 5.469

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  129 in total

1.  Analysis of the unwinding activity of the dimeric RECQ1 helicase in the presence of human replication protein A.

Authors:  Sheng Cui; Daniele Arosio; Kevin M Doherty; Robert M Brosh; Arturo Falaschi; Alessandro Vindigni
Journal:  Nucleic Acids Res       Date:  2004-04-19       Impact factor: 16.971

2.  Efficient coupling of ATP hydrolysis to translocation by RecQ helicase.

Authors:  Behzad Rad; Stephen C Kowalczykowski
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

Review 3.  RecQ helicases; at the crossroad of genome replication, repair, and recombination.

Authors:  Sarallah Rezazadeh
Journal:  Mol Biol Rep       Date:  2011-09-23       Impact factor: 2.316

4.  RecQ helicase translocates along single-stranded DNA with a moderate processivity and tight mechanochemical coupling.

Authors:  Kata Sarlós; Máté Gyimesi; Mihály Kovács
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

5.  Synergic and opposing activities of thermophilic RecQ-like helicase and topoisomerase 3 proteins in Holliday junction processing and replication fork stabilization.

Authors:  Anna Valenti; Mariarita De Felice; Giuseppe Perugino; Anna Bizard; Marc Nadal; Mosè Rossi; Maria Ciaramella
Journal:  J Biol Chem       Date:  2012-06-21       Impact factor: 5.157

6.  Delineation of WRN helicase function with EXO1 in the replicational stress response.

Authors:  Monika Aggarwal; Joshua A Sommers; Christa Morris; Robert M Brosh
Journal:  DNA Repair (Amst)       Date:  2010-05-05

7.  An essential DNA strand-exchange activity is conserved in the divergent N-termini of BLM orthologs.

Authors:  Chi-Fu Chen; Steven J Brill
Journal:  EMBO J       Date:  2010-04-13       Impact factor: 11.598

8.  Genome-wide analysis of helicase gene family from rice and Arabidopsis: a comparison with yeast and human.

Authors:  Pavan Umate; Renu Tuteja; Narendra Tuteja
Journal:  Plant Mol Biol       Date:  2010-04-10       Impact factor: 4.076

9.  Mutual inhibition of RecQ molecules in DNA unwinding.

Authors:  Bing-Yi Pan; Shuo-Xing Dou; Ye Yang; Ya-Nan Xu; Elisabeth Bugnard; Xiu-Yan Ding; Lingyun Zhang; Peng-Ye Wang; Ming Li; Xu Guang Xi
Journal:  J Biol Chem       Date:  2010-03-15       Impact factor: 5.157

10.  Solution structure of the RecQ C-terminal domain of human Bloom syndrome protein.

Authors:  Chin-Ju Park; Junsang Ko; Kyoung-Seok Ryu; Byong-Seok Choi
Journal:  J Biomol NMR       Date:  2014-01-17       Impact factor: 2.835

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