Literature DB >> 2265618

Direct visualization of supercoiled DNA molecules in solution.

M Adrian1, B ten Heggeler-Bordier, W Wahli, A Z Stasiak, A Stasiak, J Dubochet.   

Abstract

The shape of supercoiled DNA molecules in solution is directly visualized by cryo-electron microscopy of vitrified samples. We observe that: (i) supercoiled DNA molecules in solution adopt an interwound rather than a toroidal form, (ii) the diameter of the interwound superhelix changes from about 12 nm to 4 nm upon addition of magnesium salt to the solution and (iii) the partition of the linking deficit between twist and writhe can be quantitatively determined for individual molecules.

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Year:  1990        PMID: 2265618      PMCID: PMC552252          DOI: 10.1002/j.1460-2075.1990.tb07907.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  15 in total

1.  Structure of plectonemically supercoiled DNA.

Authors:  T C Boles; J H White; N R Cozzarelli
Journal:  J Mol Biol       Date:  1990-06-20       Impact factor: 5.469

2.  The stereostructure of knots and catenanes produced by phage lambda integrative recombination: implications for mechanism and DNA structure.

Authors:  S J Spengler; A Stasiak; N R Cozzarelli
Journal:  Cell       Date:  1985-08       Impact factor: 41.582

3.  Environmental influences on DNA superhelicity. The effect of ionic strength on superhelix conformation in solution.

Authors:  G W Brady; M Satkowski; D Foos; C J Benham
Journal:  J Mol Biol       Date:  1987-05-05       Impact factor: 5.469

4.  The P22 bacteriophage DNA molecule. II. Circular intracellular forms.

Authors:  M Rhoades; C A Thomas
Journal:  J Mol Biol       Date:  1968-10-14       Impact factor: 5.469

5.  Quantitative analysis of the contributions of enzyme and DNA to the structure of lambda integrative recombinants.

Authors:  S J Spengler; A Stasiak; A Z Stasiak; N R Cozzarelli
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1984

6.  Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling.

Authors:  D S Horowitz; J C Wang
Journal:  J Mol Biol       Date:  1984-02-15       Impact factor: 5.469

7.  Cryo-electron microscopy of viruses.

Authors:  M Adrian; J Dubochet; J Lepault; A W McDowall
Journal:  Nature       Date:  1984 Mar 1-7       Impact factor: 49.962

8.  The vestibular apparatus.

Authors:  D E Parker
Journal:  Sci Am       Date:  1980-11       Impact factor: 2.142

9.  Use of site-specific recombination as a probe of DNA structure and metabolism in vivo.

Authors:  J B Bliska; N R Cozzarelli
Journal:  J Mol Biol       Date:  1987-03-20       Impact factor: 5.469

10.  Electron microscopy can be used to measure DNA supertwisting.

Authors:  J M Sperrazza; J C Register; J Griffith
Journal:  Gene       Date:  1984-11       Impact factor: 3.688

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  42 in total

1.  Dynamics of site juxtaposition in supercoiled DNA.

Authors:  J Huang; T Schlick; A Vologodskii
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Intermolecular interactions and water structure in a condensed phase B-DNA crystal.

Authors:  G R Clark; C J Squire; L J Baker; R F Martin; J White
Journal:  Nucleic Acids Res       Date:  2000-03-01       Impact factor: 16.971

3.  Electrostatic-undulatory theory of plectonemically supercoiled DNA.

Authors:  J Ubbink; T Odijk
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

4.  Monte Carlo simulations of supercoiled DNAs confined to a plane.

Authors:  Bryant S Fujimoto; J Michael Schurr
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

5.  RapA, a bacterial homolog of SWI2/SNF2, stimulates RNA polymerase recycling in transcription.

Authors:  M V Sukhodolets; J E Cabrera; H Zhi; D J Jin
Journal:  Genes Dev       Date:  2001-12-15       Impact factor: 11.361

6.  Winding of the DNA helix by divalent metal ions.

Authors:  Y C Xu; H Bremer
Journal:  Nucleic Acids Res       Date:  1997-10-15       Impact factor: 16.971

7.  Crystal structure and DNA-binding analysis of RecO from Deinococcus radiodurans.

Authors:  Ingar Leiros; Joanna Timmins; David R Hall; Sean McSweeney
Journal:  EMBO J       Date:  2005-02-17       Impact factor: 11.598

8.  The influence of salt on the structure and energetics of supercoiled DNA.

Authors:  T Schlick; B Li; W K Olson
Journal:  Biophys J       Date:  1994-12       Impact factor: 4.033

9.  Scanning force microscopy of circular and linear plasmid DNA spread on mica with a quaternary ammonium salt.

Authors:  A Schaper; L I Pietrasanta; T M Jovin
Journal:  Nucleic Acids Res       Date:  1993-12-25       Impact factor: 16.971

10.  Salt-dependent DNA superhelix diameter studied by small angle neutron scattering measurements and Monte Carlo simulations.

Authors:  M Hammermann; N Brun; K V Klenin; R May; K Tóth; J Langowski
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

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