Literature DB >> 15709782

Isotope effects for deuterium transfer between substrate and coenzyme in adenosylcobalamin-dependent glutamate mutase.

Mou-Chi Cheng1, E Neil G Marsh.   

Abstract

A key step in the mechanism of all adenosylcobalamin-dependent enzymes is the abstraction of a hydrogen atom from the substrate by a 5'-deoxyadenosyl radical generated by homolytic fission of the coenzyme cobalt-carbon bond. We have investigated the isotope effects associated with this process for glutamate mutase reacting with deuterated glutamate. The kinetics of deuterium incorporation into 5'-deoxyadenosine (5'-dA) during the reaction were followed by rapid chemical quench, using HPLC and electrospray mass spectrometry to analyze the 5'-dA formed. The kinetics of 5'-dA formation are biphasic, comprising a rapid phase k(app) = 37 +/- 3 s(-)(1) and a slower phase k(app) = 0.9 +/- 0.4 s(-)(1). The mass spectral data clearly show that the faster phase is associated with the formation of monodeuterated 5'-dA whereas the slower phase is associated with the incorporation of a second and then a third deuterium into 5'-dA. This observation implies that a large inverse equilibrium secondary isotope effect is associated with the formation of 5'-dA from adenosylcobalamin. The primary deuterium kinetic isotope effects on V and V/K for the formation of 5'-dA were determined from time-based and competition experiments. (D)V = 2.4 +/-0.4 whereas (D)(V/K) = 10 +/- 0.4, implying that an isotopically insensitive step is partially rate-determining. The additional data provided by these experiments cause us to revise our interpretation of earlier UV-visible stopped-flow kinetic measurements of AdoCbl homolysis obtained with deuterated substrates.

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Year:  2005        PMID: 15709782     DOI: 10.1021/bi047662b

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  Entropic origin of cobalt-carbon bond cleavage catalysis in adenosylcobalamin-dependent ethanolamine ammonia-lyase.

Authors:  Miao Wang; Kurt Warncke
Journal:  J Am Chem Soc       Date:  2013-10-01       Impact factor: 15.419

2.  Hydrogen tunneling in adenosylcobalamin-dependent glutamate mutase: evidence from intrinsic kinetic isotope effects measured by intramolecular competition.

Authors:  Miri Yoon; Hangtian Song; Kristina Håkansson; E Neil G Marsh
Journal:  Biochemistry       Date:  2010-04-13       Impact factor: 3.162

Review 3.  Adenosylcobalamin enzymes: theory and experiment begin to converge.

Authors:  E Neil G Marsh; Gabriel D Román Meléndez
Journal:  Biochim Biophys Acta       Date:  2012-04-03

4.  Reversible Formation of Alkyl Radicals at [Fe4S4] Clusters and Its Implications for Selectivity in Radical SAM Enzymes.

Authors:  Alexandra C Brown; Daniel L M Suess
Journal:  J Am Chem Soc       Date:  2020-08-06       Impact factor: 15.419

5.  Deuterium isotope effects in the unusual addition of toluene to fumarate catalyzed by benzylsuccinate synthase.

Authors:  Lei Li; E Neil G Marsh
Journal:  Biochemistry       Date:  2006-11-21       Impact factor: 3.162

6.  Evidence for coupled motion and hydrogen tunneling of the reaction catalyzed by glutamate mutase.

Authors:  Mou-Chi Cheng; E Neil G Marsh
Journal:  Biochemistry       Date:  2007-01-23       Impact factor: 3.162

7.  Changes in the free energy profile of glutamate mutase imparted by the mutation of an active site arginine residue to lysine.

Authors:  Anjali Patwardhan; E Neil G Marsh
Journal:  Arch Biochem Biophys       Date:  2007-01-31       Impact factor: 4.013

8.  Probing reversible chemistry in coenzyme B12 -dependent ethanolamine ammonia lyase with kinetic isotope effects.

Authors:  Alex R Jones; Julius Rentergent; Nigel S Scrutton; Sam Hay
Journal:  Chemistry       Date:  2015-05-07       Impact factor: 5.236

9.  Structure-Based Demystification of Radical Catalysis by a Coenzyme B12 Dependent Enzyme-Crystallographic Study of Glutamate Mutase with Cofactor Homologues.

Authors:  Karl Gruber; Vanessa Csitkovits; Andrzej Łyskowski; Christoph Kratky; Bernhard Kräutler
Journal:  Angew Chem Int Ed Engl       Date:  2022-07-21       Impact factor: 16.823

10.  Synthesis of Mono- and Di-Deuterated (2S, 3S)-3-Methylaspartic Acids to Facilitate Measurement of Intrinsic Kinetic Isotope Effects in Enzymes.

Authors:  Hyang-Yeol Lee; Miri Yoon; E Neil G Marsh
Journal:  Tetrahedron       Date:  2007-05-28       Impact factor: 2.457

  10 in total

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