Literature DB >> 17105211

Deuterium isotope effects in the unusual addition of toluene to fumarate catalyzed by benzylsuccinate synthase.

Lei Li1, E Neil G Marsh.   

Abstract

The first step in the anaerobic metabolism of toluene is a highly unusual reaction: the addition of toluene across the double bond of fumarate to produce (R)-benzylsuccinate, which is catalyzed by benzylsuccinate synthase. Benzylsuccinate synthase is a member of the glycyl radical-containing family of enzymes, and the reaction is initiated by abstraction of a hydrogen atom from the methyl group of toluene. To gain insight into the free energy profile of this reaction, we have measured the kinetic isotope effects on Vmax and Vmax/Km when deuterated toluene is the substrate. At 30 degrees C the isotope effects are 1.7 +/- 0.2 and 2.9 +/- 0.1 on Vmax and Vmax/Km, respectively; at 4 degrees C they increase slightly to 2.2 +/- 0.2 and 3.1 +/- 0.1, respectively. We compare these results with the theoretical isotope effects on Vmax and Vmax/Km that are predicted from the free energy profile for the uncatalyzed reaction, which has previously been computed using density functional theory [Himo, F. (2002) J. Phys. Chem. B 106, 7688-7692]. The comparison allows us to draw some conclusions on how the enzyme may catalyze this unusual reaction.

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Year:  2006        PMID: 17105211      PMCID: PMC2519130          DOI: 10.1021/bi061117o

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  21 in total

1.  A stable organic free radical in anaerobic benzylsuccinate synthase of Azoarcus sp. strain T.

Authors:  C J Krieger; W Roseboom; S P Albracht; A M Spormann
Journal:  J Biol Chem       Date:  2001-01-30       Impact factor: 5.157

Review 2.  Metabolism of alkylbenzenes, alkanes, and other hydrocarbons in anaerobic bacteria.

Authors:  A M Spormann; F Widdel
Journal:  Biodegradation       Date:  2000       Impact factor: 3.909

3.  Analysis of the novel benzylsuccinate synthase reaction for anaerobic toluene activation based on structural studies of the product.

Authors:  H R Beller; A M Spormann
Journal:  J Bacteriol       Date:  1998-10       Impact factor: 3.490

Review 4.  New glycyl radical enzymes catalysing key metabolic steps in anaerobic bacteria.

Authors:  Thorsten Selmer; Antonio J Pierik; Johann Heider
Journal:  Biol Chem       Date:  2005-10       Impact factor: 3.915

5.  Mechanism of benzylsuccinate synthase: stereochemistry of toluene addition to fumarate and maleate.

Authors:  Chunhua Qiao; E Neil G Marsh
Journal:  J Am Chem Soc       Date:  2005-06-22       Impact factor: 15.419

6.  Nature of hydrogen transfer in soybean lipoxygenase 1: separation of primary and secondary isotope effects.

Authors:  K W Rickert; J P Klinman
Journal:  Biochemistry       Date:  1999-09-21       Impact factor: 3.162

7.  Isotope effects in the transient phases of the reaction catalyzed by ethanolamine ammonia-lyase: determination of the number of exchangeable hydrogens in the enzyme-cofactor complex.

Authors:  V Bandarian; G H Reed
Journal:  Biochemistry       Date:  2000-10-03       Impact factor: 3.162

8.  Transcriptional analysis of the tutE tutFDGH gene cluster from Thauera aromatica strain T1.

Authors:  P W Coschigano
Journal:  Appl Environ Microbiol       Date:  2000-03       Impact factor: 4.792

9.  Isotope effects for deuterium transfer between substrate and coenzyme in adenosylcobalamin-dependent glutamate mutase.

Authors:  Mou-Chi Cheng; E Neil G Marsh
Journal:  Biochemistry       Date:  2005-02-22       Impact factor: 3.162

10.  Coupling of cobalt-carbon bond homolysis and hydrogen atom abstraction in adenosylcobalamin-dependent glutamate mutase.

Authors:  E N Marsh; D P Ballou
Journal:  Biochemistry       Date:  1998-08-25       Impact factor: 3.162

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  12 in total

Review 1.  Cysteine residues as catalysts for covalent peptide and protein modification: a role for thiyl radicals?

Authors:  Christian Schöneich
Journal:  Biochem Soc Trans       Date:  2011-10       Impact factor: 5.407

2.  Evidence for benzylsuccinate synthase subtypes obtained by using stable isotope tools.

Authors:  Steffen Kümmel; Kevin Kuntze; Carsten Vogt; Matthias Boll; Johann Heider; Hans H Richnow
Journal:  J Bacteriol       Date:  2013-08-09       Impact factor: 3.490

3.  Structures of benzylsuccinate synthase elucidate roles of accessory subunits in glycyl radical enzyme activation and activity.

Authors:  Michael A Funk; Evan T Judd; E Neil G Marsh; Sean J Elliott; Catherine L Drennan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-30       Impact factor: 11.205

4.  Mechanistic Studies of a Skatole-Forming Glycyl Radical Enzyme Suggest Reaction Initiation via Hydrogen Atom Transfer.

Authors:  Beverly Fu; Azadeh Nazemi; Benjamin J Levin; Zhongyue Yang; Heather J Kulik; Emily P Balskus
Journal:  J Am Chem Soc       Date:  2022-06-15       Impact factor: 16.383

5.  Mechanistic studies of the spore photoproduct lyase via a single cysteine mutation.

Authors:  Linlin Yang; Gengjie Lin; Renae S Nelson; Yajun Jian; Joshua Telser; Lei Li
Journal:  Biochemistry       Date:  2012-08-31       Impact factor: 3.162

6.  Substrate-bound structures of benzylsuccinate synthase reveal how toluene is activated in anaerobic hydrocarbon degradation.

Authors:  Michael A Funk; E Neil G Marsh; Catherine L Drennan
Journal:  J Biol Chem       Date:  2015-07-29       Impact factor: 5.157

7.  A radical transfer pathway in spore photoproduct lyase.

Authors:  Linlin Yang; Renae S Nelson; Alhosna Benjdia; Gengjie Lin; Joshua Telser; Stefan Stoll; Ilme Schlichting; Lei Li
Journal:  Biochemistry       Date:  2013-04-22       Impact factor: 3.162

8.  Subunit structure of benzylsuccinate synthase.

Authors:  Lei Li; Dustin P Patterson; Christel C Fox; Brian Lin; Peter W Coschigano; E Neil G Marsh
Journal:  Biochemistry       Date:  2009-02-17       Impact factor: 3.162

9.  Modeling of the Reaction Mechanism of Enzymatic Radical C-C Coupling by Benzylsuccinate Synthase.

Authors:  Maciej Szaleniec; Johann Heider
Journal:  Int J Mol Sci       Date:  2016-04-07       Impact factor: 5.923

Review 10.  New tricks for the glycyl radical enzyme family.

Authors:  Lindsey R F Backman; Michael A Funk; Christopher D Dawson; Catherine L Drennan
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-09-13       Impact factor: 8.250

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