Literature DB >> 15705514

3D NMR spectroscopy for resonance assignment and structure elucidation of proteins under MAS: novel pulse schemes and sensitivity considerations.

Henrike Heise1, Karsten Seidel, Manuel Etzkorn, Stefan Becker, Marc Baldus.   

Abstract

Two types of 3D MAS NMR experiments are introduced, which combine standard (NC,CC) transfer schemes with (1H,1H) mixing to simultaneously detect connectivities and structural constraints of uniformly 15N,13C-labeled proteins with high spectral resolution. The homonuclear CCHHC and CCC experiments are recorded with one double-quantum evolution dimension in order to avoid a cubic diagonal in the spectrum. Depending on the second transfer step, spin systems or proton-proton contacts can be determined with reduced spectral overlap. The heteronuclear NHHCC experiment encodes NH-HC proton-proton interactions, which are indicative for the backbone conformation of the protein. The third dimension facilitates the identification of the amino acid spin system. Experimental results on U-[15N,13C]valine and U-[15N,13C]ubiquitin demonstrate their usefulness for resonance assignments and for the determination of structural constraints. Furthermore, we give a detailed analysis of alternative multidimensional sampling schemes and their effect on sensitivity and resolution.

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Year:  2005        PMID: 15705514     DOI: 10.1016/j.jmr.2004.11.020

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  19 in total

1.  Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies.

Authors:  Sivakumar Paramasivam; Christopher L Suiter; Guangjin Hou; Shangjin Sun; Melissa Palmer; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-06-18       Impact factor: 2.991

2.  Three-dimensional experiment for solid-state NMR of aligned protein samples in high field magnets.

Authors:  Alexander A Nevzorov; Sang Ho Park; Stanley J Opella
Journal:  J Biomol NMR       Date:  2007-01-10       Impact factor: 2.835

3.  Triple resonance experiments for aligned sample solid-state NMR of (13)C and (15)N labeled proteins.

Authors:  Neeraj Sinha; Christopher V Grant; Sang Ho Park; Jonathan Miles Brown; Stanley J Opella
Journal:  J Magn Reson       Date:  2007-01-24       Impact factor: 2.229

Review 4.  Magnetic resonance in the solid state: applications to protein folding, amyloid fibrils and membrane proteins.

Authors:  Marc Baldus
Journal:  Eur Biophys J       Date:  2007-05-31       Impact factor: 1.733

5.  Sensitivity of nonuniform sampling NMR.

Authors:  Melissa R Palmer; Christopher L Suiter; Geneive E Henry; James Rovnyak; Jeffrey C Hoch; Tatyana Polenova; David Rovnyak
Journal:  J Phys Chem B       Date:  2015-05-18       Impact factor: 2.991

6.  Band-selective 13C homonuclear 3D spectroscopy for solid proteins at high field with rotor-synchronized soft pulses.

Authors:  Donghua H Zhou; Kathryn D Kloepper; Kem A Winter; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2006-04       Impact factor: 2.835

7.  A Monte Carlo/simulated annealing algorithm for sequential resonance assignment in solid state NMR of uniformly labeled proteins with magic-angle spinning.

Authors:  Robert Tycko; Kan-Nian Hu
Journal:  J Magn Reson       Date:  2010-05-25       Impact factor: 2.229

8.  Characterizing proteins in a native bacterial environment using solid-state NMR spectroscopy.

Authors:  Siddarth Narasimhan; Cecilia Pinto; Alessandra Lucini Paioni; Johan van der Zwan; Gert E Folkers; Marc Baldus
Journal:  Nat Protoc       Date:  2021-01-13       Impact factor: 13.491

9.  Solid-state NMR spectroscopy of 10% 13C labeled ubiquitin: spectral simplification and stereospecific assignment of isopropyl groups.

Authors:  Mario Schubert; Theofanis Manolikas; Marco Rogowski; Beat H Meier
Journal:  J Biomol NMR       Date:  2006-07       Impact factor: 2.835

10.  3D (13)C-(13)C-(13)C correlation NMR for de novo distance determination of solid proteins and application to a human alpha-defensin.

Authors:  Shenhui Li; Yuan Zhang; Mei Hong
Journal:  J Magn Reson       Date:  2009-11-18       Impact factor: 2.229

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