Literature DB >> 16858625

Solid-state NMR spectroscopy of 10% 13C labeled ubiquitin: spectral simplification and stereospecific assignment of isopropyl groups.

Mario Schubert1, Theofanis Manolikas, Marco Rogowski, Beat H Meier.   

Abstract

We describe the simplification of 13C-13C correlation spectra obtained from a microcrystalline protein sample expressed on a growth medium of 10% fully 13C labeled glucose diluted in 90% natural abundance glucose as compared to a fully labeled sample. Such a labeling scheme facilitates the backbone and side-chain resonance assignment of Phe, Tyr, His, Asp, Asn, Ile, Lys and Pro and yields an unambiguous stereospecific assignment of the valine Cgamma1, Cgamma2 13C resonances and of Leucine Cdelta2.

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Year:  2006        PMID: 16858625     DOI: 10.1007/s10858-006-9025-x

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  16 in total

1.  The KEGG resource for deciphering the genome.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Yasushi Okuno; Masahiro Hattori
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  High-resolution solid-state NMR spectroscopy of the prion protein HET-s in its amyloid conformation.

Authors:  Ansgar B Siemer; Christiane Ritter; Matthias Ernst; Roland Riek; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2005-04-15       Impact factor: 15.336

3.  Protein structure determination by high-resolution solid-state NMR spectroscopy: application to microcrystalline ubiquitin.

Authors:  Stephan G Zech; A Joshua Wand; Ann E McDermott
Journal:  J Am Chem Soc       Date:  2005-06-22       Impact factor: 15.419

Review 4.  An evaluation of computational strategies for use in the determination of protein structure from distance constraints obtained by nuclear magnetic resonance.

Authors:  T F Havel
Journal:  Prog Biophys Mol Biol       Date:  1991       Impact factor: 3.667

5.  Floating stereospecific assignment revisited: application to an 18 kDa protein and comparison with J-coupling data.

Authors:  R H Folmer; C W Hilbers; R N Konings; M Nilges
Journal:  J Biomol NMR       Date:  1997-04       Impact factor: 2.835

6.  An improved broadband decoupling sequence for liquid crystals and solids.

Authors:  B M Fung; A K Khitrin; K Ermolaev
Journal:  J Magn Reson       Date:  2000-01       Impact factor: 2.229

7.  Residual backbone and side-chain 13C and 15N resonance assignments of the intrinsic transmembrane light-harvesting 2 protein complex by solid-state Magic Angle Spinning NMR spectroscopy.

Authors:  A J van Gammeren; F B Hulsbergen; J G Hollander; H J M de Groot
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

8.  Solid state NMR sequential resonance assignments and conformational analysis of the 2x10.4 kDa dimeric form of the Bacillus subtilis protein Crh.

Authors:  Anja Böckmann; Adam Lange; Anne Galinier; Sorin Luca; Nicolas Giraud; Michel Juy; Henrike Heise; Roland Montserret; François Penin; Marc Baldus
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

9.  Assignments of carbon NMR resonances for microcrystalline ubiquitin.

Authors:  Tatyana I Igumenova; Ann E McDermott; Kurt W Zilm; Rachel W Martin; Eric K Paulson; A Joshua Wand
Journal:  J Am Chem Soc       Date:  2004-06-02       Impact factor: 15.419

10.  EcoCyc: a comprehensive database resource for Escherichia coli.

Authors:  Ingrid M Keseler; Julio Collado-Vides; Socorro Gama-Castro; John Ingraham; Suzanne Paley; Ian T Paulsen; Martín Peralta-Gil; Peter D Karp
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

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  16 in total

1.  Solid-state NMR spectroscopy of protein complexes.

Authors:  Shangjin Sun; Yun Han; Sivakumar Paramasivam; Si Yan; Amanda E Siglin; John C Williams; In-Ja L Byeon; Jinwoo Ahn; Angela M Gronenborn; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2012

2.  Three-dimensional deuterium-carbon correlation experiments for high-resolution solid-state MAS NMR spectroscopy of large proteins.

Authors:  Daniela Lalli; Paul Schanda; Anup Chowdhury; Joren Retel; Matthias Hiller; Victoria A Higman; Lieselotte Handel; Vipin Agarwal; Bernd Reif; Barth van Rossum; Umit Akbey; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2011-10-25       Impact factor: 2.835

3.  Structural basis of pre-let-7 miRNA recognition by the zinc knuckles of pluripotency factor Lin28.

Authors:  Fionna E Loughlin; Luca F R Gebert; Harry Towbin; Andreas Brunschweiger; Jonathan Hall; Frédéric H-T Allain
Journal:  Nat Struct Mol Biol       Date:  2011-12-11       Impact factor: 15.369

4.  PAIN with and without PAR: variants for third-spin assisted heteronuclear polarization transfer.

Authors:  Vipin Agarwal; Mariana Sardo; Ingo Scholz; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2013-06-27       Impact factor: 2.835

5.  Partially-deuterated samples of HET-s(218-289) fibrils: assignment and deuterium isotope effect.

Authors:  Albert A Smith; Francesco Ravotti; Emilie Testori; Riccardo Cadalbert; Matthias Ernst; Anja Böckmann; Beat H Meier
Journal:  J Biomol NMR       Date:  2017-01-10       Impact factor: 2.835

6.  Ubiquitin immobilized on mesoporous MCM41 silica surfaces - Analysis by solid-state NMR with biophysical and surface characterization.

Authors:  Nurit Adiram-Filiba; Avital Schremer; Eli Ohaion; Merav Nadav-Tsubery; Tammi Lublin-Tennenbaum; Keren Keinan-Adamsky; Gil Goobes
Journal:  Biointerphases       Date:  2017-05-31       Impact factor: 2.456

7.  Secondary structural analysis of proteins based on (13)C chemical shift assignments in unresolved solid-state NMR spectra enhanced by fragmented structure database.

Authors:  Keisuke Ikeda; Ayako Egawa; Toshimichi Fujiwara
Journal:  J Biomol NMR       Date:  2012-12-29       Impact factor: 2.835

8.  BSH-CP based 3D solid-state NMR experiments for protein resonance assignment.

Authors:  Chaowei Shi; Hannes K Fasshuber; Veniamin Chevelkov; Shengqi Xiang; Birgit Habenstein; Suresh Kumar Vasa; Stefan Becker; Adam Lange
Journal:  J Biomol NMR       Date:  2014-03-01       Impact factor: 2.835

9.  Optimization of amino acid type-specific 13C and 15N labeling for the backbone assignment of membrane proteins by solution- and solid-state NMR with the UPLABEL algorithm.

Authors:  Frederik Hefke; Anurag Bagaria; Sina Reckel; Sandra Johanna Ullrich; Volker Dötsch; Clemens Glaubitz; Peter Güntert
Journal:  J Biomol NMR       Date:  2010-12-18       Impact factor: 2.835

10.  Assigning large proteins in the solid state: a MAS NMR resonance assignment strategy using selectively and extensively 13C-labelled proteins.

Authors:  Victoria A Higman; Jeremy Flinders; Matthias Hiller; Stefan Jehle; Stefan Markovic; Sebastian Fiedler; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2009-07-17       Impact factor: 2.835

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