Literature DB >> 16511151

Preliminary crystallographic analysis of the major capsid protein P2 of the lipid-containing bacteriophage PM2.

Nicola G A Abrescia1, Hanna M Kivelä, Jonathan M Grimes, Jaana K H Bamford, Dennis H Bamford, David I Stuart.   

Abstract

PM2 (Corticoviridae) is a dsDNA bacteriophage which contains a lipid membrane beneath its icosahedral capsid. In this respect it resembles bacteriophage PRD1 (Tectiviridae), although it is not known whether the similarity extends to the detailed molecular architecture of the virus, for instance the fold of the major coat protein P2. Structural analysis of PM2 has been initiated and virus-derived P2 has been crystallized by sitting-nanodrop vapour diffusion. Crystals of P2 have been obtained in space group P2(1)2(1)2, with two trimers in the asymmetric unit and unit-cell parameters a = 171.1, b = 78.7, c = 130.1 A. The crystals diffract to 4 A resolution at the ESRF BM14 beamline (Grenoble, France) and the orientation of the non-crystallographic threefold axes, the spatial relationship between the two trimers and the packing of the trimers within the unit cell have been determined. The trimers form tightly packed layers consistent with the crystal morphology, possibly recapitulating aspects of the arrangement of subunits in the virus.

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Year:  2005        PMID: 16511151      PMCID: PMC1952355          DOI: 10.1107/S174430910502141X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  19 in total

1.  The complete genome sequence of PM2, the first lipid-containing bacterial virus To Be isolated.

Authors:  R H Männistö; H M Kivelä; L Paulin; D H Bamford; J K Bamford
Journal:  Virology       Date:  1999-09-30       Impact factor: 3.616

2.  The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus.

Authors:  Narayanasamy Nandhagopal; Alan A Simpson; James R Gurnon; Xiadong Yan; Timothy S Baker; Michael V Graves; James L Van Etten; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-31       Impact factor: 11.205

Review 3.  Evolution of viral structure.

Authors:  Dennis H Bamford; Roger M Burnett; David I Stuart
Journal:  Theor Popul Biol       Date:  2002-06       Impact factor: 1.570

4.  The PM2 virion has a novel organization with an internal membrane and pentameric receptor binding spikes.

Authors:  Juha T Huiskonen; Hanna M Kivelä; Dennis H Bamford; Sarah J Butcher
Journal:  Nat Struct Mol Biol       Date:  2004-08-01       Impact factor: 15.369

5.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

6.  Membrane structure and interactions with protein and DNA in bacteriophage PRD1.

Authors:  Joseph J B Cockburn; Nicola G A Abrescia; Jonathan M Grimes; Geoffrey C Sutton; Jonathan M Diprose; James M Benevides; George J Thomas; Jaana K H Bamford; Dennis H Bamford; David I Stuart
Journal:  Nature       Date:  2004-11-04       Impact factor: 49.962

7.  Insights into assembly from structural analysis of bacteriophage PRD1.

Authors:  Nicola G A Abrescia; Joseph J B Cockburn; Jonathan M Grimes; Geoffrey C Sutton; Jonathan M Diprose; Sarah J Butcher; Stephen D Fuller; Carmen San Martín; Roger M Burnett; David I Stuart; Dennis H Bamford; Jaana K H Bamford
Journal:  Nature       Date:  2004-11-04       Impact factor: 49.962

8.  Do viruses form lineages across different domains of life?

Authors:  Dennis H Bamford
Journal:  Res Microbiol       Date:  2003-05       Impact factor: 3.992

9.  Purification and protein composition of PM2, the first lipid-containing bacterial virus to be isolated.

Authors:  H M Kivelä; R H Männistö; N Kalkkinen; D H Bamford
Journal:  Virology       Date:  1999-09-30       Impact factor: 3.616

10.  Bacteriophage PM2 has a protein capsid surrounding a spherical proteinaceous lipid core.

Authors:  Hanna M Kivelä; Nisse Kalkkinen; Dennis H Bamford
Journal:  J Virol       Date:  2002-08       Impact factor: 5.103

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  4 in total

1.  Genome characterization of lipid-containing marine bacteriophage PM2 by transposon insertion mutagenesis.

Authors:  Mart Krupovic; Heikki Vilen; Jaana K H Bamford; Hanna M Kivelä; Juha-Matti Aalto; Harri Savilahti; Dennis H Bamford
Journal:  J Virol       Date:  2006-09       Impact factor: 5.103

2.  Genetics for Pseudoalteromonas provides tools to manipulate marine bacterial virus PM2.

Authors:  Hanna M Kivelä; Stefania Madonna; Mart Krupovìc; M Luisa Tutino; Jaana K H Bamford
Journal:  J Bacteriol       Date:  2007-12-14       Impact factor: 3.490

3.  Putative prophages related to lytic tailless marine dsDNA phage PM2 are widespread in the genomes of aquatic bacteria.

Authors:  Mart Krupovic; Dennis H Bamford
Journal:  BMC Genomics       Date:  2007-07-16       Impact factor: 3.969

Review 4.  From lows to highs: using low-resolution models to phase X-ray data.

Authors:  David I Stuart; Nicola G A Abrescia
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-10-18
  4 in total

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