Literature DB >> 21505245

A rational protocol for the successful crystallization of L-amino-acid oxidase from Bothrops atrox.

Raquel Melo Alves1, Patricia Rosa Feliciano, Suely Vilela Sampaio, Maria Cristina Nonato.   

Abstract

Despite the valuable contributions of robotics and high-throughput approaches to protein crystallization, the role of an experienced crystallographer in the evaluation and rationalization of a crystallization process is still crucial to obtaining crystals suitable for X-ray diffraction measurements. In this work, the difficult task of crystallizing the flavoenzyme L-amino-acid oxidase purified from Bothrops atrox snake venom was overcome by the development of a protocol that first required the identification of a non-amorphous precipitate as a promising crystallization condition followed by the implementation of a methodology that combined crystallization in the presence of oil and seeding techniques. Crystals were obtained and a complete data set was collected to 2.3 Å resolution. The crystals belonged to space group P2(1), with unit-cell parameters a = 73.64, b = 123.92, c = 105.08 Å, β = 96.03°. There were four protein subunits in the asymmetric unit, which gave a Matthews coefficient V(M) of 2.12 Å(3) Da(-1), corresponding to 42% solvent content. The structure has been solved by molecular-replacement techniques.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21505245      PMCID: PMC3080154          DOI: 10.1107/S1744309111003770

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  34 in total

1.  Antimicrobial action of achacin is mediated by L-amino acid oxidase activity.

Authors:  Tatsuya Ehara; Seiji Kitajima; Nobuyuki Kanzawa; Toru Tamiya; Takahide Tsuchiya
Journal:  FEBS Lett       Date:  2002-11-20       Impact factor: 4.124

2.  Cloning and biochemical characterization of APIT, a new l-amino acid oxidase from Aplysia punctata.

Authors:  Daniel Butzke; Robert Hurwitz; Bernd Thiede; Sigrid Goedert; Thomas Rudel
Journal:  Toxicon       Date:  2005-10       Impact factor: 3.033

Review 3.  Life in the fast lane for protein crystallization and X-ray crystallography.

Authors:  Marc L Pusey; Zhi-Jie Liu; Wolfram Tempel; Jeremy Praissman; Dawei Lin; Bi-Cheng Wang; José A Gavira; Joseph D Ng
Journal:  Prog Biophys Mol Biol       Date:  2005-07       Impact factor: 3.667

4.  Benefits of automated crystallization plate tracking, imaging, and analysis.

Authors:  Christopher J Mayo; Jonathan M Diprose; Thomas S Walter; Ian M Berry; Julie Wilson; Ray J Owens; E Yvonne Jones; Karl Harlos; David I Stuart; Robert M Esnouf
Journal:  Structure       Date:  2005-02       Impact factor: 5.006

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Novel L-amino acid oxidase with antibacterial activity against methicillin-resistant Staphylococcus aureus isolated from epidermal mucus of the flounder Platichthys stellatus.

Authors:  Kosuke Kasai; Takashi Ishikawa; Takafumi Komata; Kaori Fukuchi; Mitsuru Chiba; Hiroyuki Nozaka; Toshiya Nakamura; Tatsusuke Sato; Tomisato Miura
Journal:  FEBS J       Date:  2009-12-15       Impact factor: 5.542

Review 7.  High-throughput crystallography for structural genomics.

Authors:  Andrzej Joachimiak
Journal:  Curr Opin Struct Biol       Date:  2009-09-16       Impact factor: 6.809

8.  Biochemical, functional and structural characterization of Akbu-LAAO: a novel snake venom L-amino acid oxidase from Agkistrodon blomhoffii ussurensis.

Authors:  Ming-Zhong Sun; Chunmei Guo; Yuxiang Tian; Duo Chen; Frederick T Greenaway; Shuqing Liu
Journal:  Biochimie       Date:  2010-01-25       Impact factor: 4.079

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  1 in total

1.  Pharmacological Investigation of CC-LAAO, an L-Amino Acid Oxidase from Cerastes cerastes Snake Venom.

Authors:  Zaineb Abdelkafi-Koubaa; Ines ELBini-Dhouib; Soumaya Souid; Jed Jebali; Raoudha Doghri; Najet Srairi-Abid; Khadija Essafi-Benkhadir; Olivier Micheau; Naziha Marrakchi
Journal:  Toxins (Basel)       Date:  2021-12-16       Impact factor: 4.546

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.